7U06

Structure of the yeast TRAPPII-Rab11/Ypt32 complex in the closed/open state (composite structure)

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
a	0005085	molecular_function	guanyl-nucleotide exchange factor activity
a	0005769	cellular_component	early endosome
a	0005794	cellular_component	Golgi apparatus
a	0005802	cellular_component	trans-Golgi network
a	0005829	cellular_component	cytosol
a	0006891	biological_process	intra-Golgi vesicle-mediated transport
a	0034498	biological_process	early endosome to Golgi transport
a	0042147	biological_process	retrograde transport, endosome to Golgi
a	1990071	cellular_component	TRAPPII protein complex
A	0005085	molecular_function	guanyl-nucleotide exchange factor activity
A	0005769	cellular_component	early endosome
A	0005794	cellular_component	Golgi apparatus
A	0005802	cellular_component	trans-Golgi network
A	0005829	cellular_component	cytosol
A	0006891	biological_process	intra-Golgi vesicle-mediated transport
A	0034498	biological_process	early endosome to Golgi transport
A	0042147	biological_process	retrograde transport, endosome to Golgi
A	1990071	cellular_component	TRAPPII protein complex
b	0005085	molecular_function	guanyl-nucleotide exchange factor activity
b	0005515	molecular_function	protein binding
b	0005769	cellular_component	early endosome
b	0005794	cellular_component	Golgi apparatus
b	0005802	cellular_component	trans-Golgi network
b	0005829	cellular_component	cytosol
b	0006891	biological_process	intra-Golgi vesicle-mediated transport
b	0006914	biological_process	autophagy
b	0016236	biological_process	macroautophagy
b	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
b	0034498	biological_process	early endosome to Golgi transport
b	0042147	biological_process	retrograde transport, endosome to Golgi
b	0048193	biological_process	Golgi vesicle transport
b	1990071	cellular_component	TRAPPII protein complex
B	0005085	molecular_function	guanyl-nucleotide exchange factor activity
B	0005515	molecular_function	protein binding
B	0005769	cellular_component	early endosome
B	0005794	cellular_component	Golgi apparatus
B	0005802	cellular_component	trans-Golgi network
B	0005829	cellular_component	cytosol
B	0006891	biological_process	intra-Golgi vesicle-mediated transport
B	0006914	biological_process	autophagy
B	0016236	biological_process	macroautophagy
B	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
B	0034498	biological_process	early endosome to Golgi transport
B	0042147	biological_process	retrograde transport, endosome to Golgi
B	0048193	biological_process	Golgi vesicle transport
B	1990071	cellular_component	TRAPPII protein complex
c	0005085	molecular_function	guanyl-nucleotide exchange factor activity
c	0005515	molecular_function	protein binding
c	0005737	cellular_component	cytoplasm
c	0005794	cellular_component	Golgi apparatus
c	0005802	cellular_component	trans-Golgi network
c	0005829	cellular_component	cytosol
c	0006891	biological_process	intra-Golgi vesicle-mediated transport
c	0042147	biological_process	retrograde transport, endosome to Golgi
c	0051274	biological_process	beta-glucan biosynthetic process
c	0065003	biological_process	protein-containing complex assembly
c	0071555	biological_process	cell wall organization
c	1990071	cellular_component	TRAPPII protein complex
C	0005085	molecular_function	guanyl-nucleotide exchange factor activity
C	0005515	molecular_function	protein binding
C	0005737	cellular_component	cytoplasm
C	0005794	cellular_component	Golgi apparatus
C	0005802	cellular_component	trans-Golgi network
C	0005829	cellular_component	cytosol
C	0006891	biological_process	intra-Golgi vesicle-mediated transport
C	0042147	biological_process	retrograde transport, endosome to Golgi
C	0051274	biological_process	beta-glucan biosynthetic process
C	0065003	biological_process	protein-containing complex assembly
C	0071555	biological_process	cell wall organization
C	1990071	cellular_component	TRAPPII protein complex
d	0003674	molecular_function	molecular_function
d	0005515	molecular_function	protein binding
d	0005634	cellular_component	nucleus
d	0005737	cellular_component	cytoplasm
d	0005794	cellular_component	Golgi apparatus
d	0005829	cellular_component	cytosol
d	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
d	0006891	biological_process	intra-Golgi vesicle-mediated transport
d	0030008	cellular_component	TRAPP complex
d	0034498	biological_process	early endosome to Golgi transport
d	0042147	biological_process	retrograde transport, endosome to Golgi
d	0065003	biological_process	protein-containing complex assembly
d	1990071	cellular_component	TRAPPII protein complex
D	0003674	molecular_function	molecular_function
D	0005515	molecular_function	protein binding
D	0005634	cellular_component	nucleus
D	0005737	cellular_component	cytoplasm
D	0005794	cellular_component	Golgi apparatus
D	0005829	cellular_component	cytosol
D	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
D	0006891	biological_process	intra-Golgi vesicle-mediated transport
D	0030008	cellular_component	TRAPP complex
D	0034498	biological_process	early endosome to Golgi transport
D	0042147	biological_process	retrograde transport, endosome to Golgi
D	0065003	biological_process	protein-containing complex assembly
D	1990071	cellular_component	TRAPPII protein complex
e	0000407	cellular_component	phagophore assembly site
e	0003674	molecular_function	molecular_function
e	0005515	molecular_function	protein binding
e	0005783	cellular_component	endoplasmic reticulum
e	0005794	cellular_component	Golgi apparatus
e	0005801	cellular_component	cis-Golgi network
e	0005802	cellular_component	trans-Golgi network
e	0005829	cellular_component	cytosol
e	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
e	0006891	biological_process	intra-Golgi vesicle-mediated transport
e	0006914	biological_process	autophagy
e	0016192	biological_process	vesicle-mediated transport
e	0016236	biological_process	macroautophagy
e	0016239	biological_process	positive regulation of macroautophagy
e	0030008	cellular_component	TRAPP complex
e	0031503	biological_process	protein-containing complex localization
e	0034497	biological_process	protein localization to phagophore assembly site
e	0042147	biological_process	retrograde transport, endosome to Golgi
e	0043087	biological_process	regulation of GTPase activity
e	0048193	biological_process	Golgi vesicle transport
e	0065003	biological_process	protein-containing complex assembly
e	1990070	cellular_component	TRAPPI protein complex
e	1990071	cellular_component	TRAPPII protein complex
e	1990072	cellular_component	TRAPPIII protein complex
E	0000407	cellular_component	phagophore assembly site
E	0003674	molecular_function	molecular_function
E	0005515	molecular_function	protein binding
E	0005783	cellular_component	endoplasmic reticulum
E	0005794	cellular_component	Golgi apparatus
E	0005801	cellular_component	cis-Golgi network
E	0005802	cellular_component	trans-Golgi network
E	0005829	cellular_component	cytosol
E	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
E	0006891	biological_process	intra-Golgi vesicle-mediated transport
E	0006914	biological_process	autophagy
E	0016192	biological_process	vesicle-mediated transport
E	0016236	biological_process	macroautophagy
E	0016239	biological_process	positive regulation of macroautophagy
E	0030008	cellular_component	TRAPP complex
E	0031503	biological_process	protein-containing complex localization
E	0034497	biological_process	protein localization to phagophore assembly site
E	0042147	biological_process	retrograde transport, endosome to Golgi
E	0043087	biological_process	regulation of GTPase activity
E	0048193	biological_process	Golgi vesicle transport
E	0065003	biological_process	protein-containing complex assembly
E	1990070	cellular_component	TRAPPI protein complex
E	1990071	cellular_component	TRAPPII protein complex
E	1990072	cellular_component	TRAPPIII protein complex
f	0000407	cellular_component	phagophore assembly site
f	0005085	molecular_function	guanyl-nucleotide exchange factor activity
f	0005515	molecular_function	protein binding
f	0005783	cellular_component	endoplasmic reticulum
f	0005794	cellular_component	Golgi apparatus
f	0005829	cellular_component	cytosol
f	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
f	0006891	biological_process	intra-Golgi vesicle-mediated transport
f	0006914	biological_process	autophagy
f	0006995	biological_process	cellular response to nitrogen starvation
f	0016192	biological_process	vesicle-mediated transport
f	0016236	biological_process	macroautophagy
f	0030008	cellular_component	TRAPP complex
f	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
f	0033106	cellular_component	cis-Golgi network membrane
f	0042147	biological_process	retrograde transport, endosome to Golgi
f	0048193	biological_process	Golgi vesicle transport
f	1990070	cellular_component	TRAPPI protein complex
f	1990071	cellular_component	TRAPPII protein complex
f	1990072	cellular_component	TRAPPIII protein complex
F	0000407	cellular_component	phagophore assembly site
F	0005085	molecular_function	guanyl-nucleotide exchange factor activity
F	0005515	molecular_function	protein binding
F	0005783	cellular_component	endoplasmic reticulum
F	0005794	cellular_component	Golgi apparatus
F	0005829	cellular_component	cytosol
F	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
F	0006891	biological_process	intra-Golgi vesicle-mediated transport
F	0006914	biological_process	autophagy
F	0006995	biological_process	cellular response to nitrogen starvation
F	0016192	biological_process	vesicle-mediated transport
F	0016236	biological_process	macroautophagy
F	0030008	cellular_component	TRAPP complex
F	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
F	0033106	cellular_component	cis-Golgi network membrane
F	0042147	biological_process	retrograde transport, endosome to Golgi
F	0048193	biological_process	Golgi vesicle transport
F	1990070	cellular_component	TRAPPI protein complex
F	1990071	cellular_component	TRAPPII protein complex
F	1990072	cellular_component	TRAPPIII protein complex
g	0000407	cellular_component	phagophore assembly site
g	0005085	molecular_function	guanyl-nucleotide exchange factor activity
g	0005515	molecular_function	protein binding
g	0005783	cellular_component	endoplasmic reticulum
g	0005794	cellular_component	Golgi apparatus
g	0005829	cellular_component	cytosol
g	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
g	0006891	biological_process	intra-Golgi vesicle-mediated transport
g	0006914	biological_process	autophagy
g	0016192	biological_process	vesicle-mediated transport
g	0016236	biological_process	macroautophagy
g	0030008	cellular_component	TRAPP complex
g	0042147	biological_process	retrograde transport, endosome to Golgi
g	0048193	biological_process	Golgi vesicle transport
g	1990070	cellular_component	TRAPPI protein complex
g	1990071	cellular_component	TRAPPII protein complex
g	1990072	cellular_component	TRAPPIII protein complex
G	0000407	cellular_component	phagophore assembly site
G	0005085	molecular_function	guanyl-nucleotide exchange factor activity
G	0005515	molecular_function	protein binding
G	0005783	cellular_component	endoplasmic reticulum
G	0005794	cellular_component	Golgi apparatus
G	0005829	cellular_component	cytosol
G	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
G	0006891	biological_process	intra-Golgi vesicle-mediated transport
G	0006914	biological_process	autophagy
G	0016192	biological_process	vesicle-mediated transport
G	0016236	biological_process	macroautophagy
G	0030008	cellular_component	TRAPP complex
G	0042147	biological_process	retrograde transport, endosome to Golgi
G	0048193	biological_process	Golgi vesicle transport
G	1990070	cellular_component	TRAPPI protein complex
G	1990071	cellular_component	TRAPPII protein complex
G	1990072	cellular_component	TRAPPIII protein complex
h	0000407	cellular_component	phagophore assembly site
h	0005085	molecular_function	guanyl-nucleotide exchange factor activity
h	0005515	molecular_function	protein binding
h	0005783	cellular_component	endoplasmic reticulum
h	0005794	cellular_component	Golgi apparatus
h	0005829	cellular_component	cytosol
h	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
h	0006891	biological_process	intra-Golgi vesicle-mediated transport
h	0006914	biological_process	autophagy
h	0016192	biological_process	vesicle-mediated transport
h	0016236	biological_process	macroautophagy
h	0030008	cellular_component	TRAPP complex
h	0042147	biological_process	retrograde transport, endosome to Golgi
h	0048193	biological_process	Golgi vesicle transport
h	0051276	biological_process	chromosome organization
h	1990070	cellular_component	TRAPPI protein complex
h	1990071	cellular_component	TRAPPII protein complex
h	1990072	cellular_component	TRAPPIII protein complex
H	0000407	cellular_component	phagophore assembly site
H	0005085	molecular_function	guanyl-nucleotide exchange factor activity
H	0005515	molecular_function	protein binding
H	0005783	cellular_component	endoplasmic reticulum
H	0005794	cellular_component	Golgi apparatus
H	0005829	cellular_component	cytosol
H	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
H	0006891	biological_process	intra-Golgi vesicle-mediated transport
H	0006914	biological_process	autophagy
H	0016192	biological_process	vesicle-mediated transport
H	0016236	biological_process	macroautophagy
H	0030008	cellular_component	TRAPP complex
H	0042147	biological_process	retrograde transport, endosome to Golgi
H	0048193	biological_process	Golgi vesicle transport
H	0051276	biological_process	chromosome organization
H	1990070	cellular_component	TRAPPI protein complex
H	1990071	cellular_component	TRAPPII protein complex
H	1990072	cellular_component	TRAPPIII protein complex
i	0000407	cellular_component	phagophore assembly site
i	0005085	molecular_function	guanyl-nucleotide exchange factor activity
i	0005515	molecular_function	protein binding
i	0005783	cellular_component	endoplasmic reticulum
i	0005794	cellular_component	Golgi apparatus
i	0005829	cellular_component	cytosol
i	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
i	0006891	biological_process	intra-Golgi vesicle-mediated transport
i	0006914	biological_process	autophagy
i	0006995	biological_process	cellular response to nitrogen starvation
i	0016192	biological_process	vesicle-mediated transport
i	0016236	biological_process	macroautophagy
i	0030008	cellular_component	TRAPP complex
i	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
i	0033106	cellular_component	cis-Golgi network membrane
i	0042147	biological_process	retrograde transport, endosome to Golgi
i	0048193	biological_process	Golgi vesicle transport
i	1990070	cellular_component	TRAPPI protein complex
i	1990071	cellular_component	TRAPPII protein complex
i	1990072	cellular_component	TRAPPIII protein complex
I	0000407	cellular_component	phagophore assembly site
I	0005085	molecular_function	guanyl-nucleotide exchange factor activity
I	0005515	molecular_function	protein binding
I	0005783	cellular_component	endoplasmic reticulum
I	0005794	cellular_component	Golgi apparatus
I	0005829	cellular_component	cytosol
I	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
I	0006891	biological_process	intra-Golgi vesicle-mediated transport
I	0006914	biological_process	autophagy
I	0006995	biological_process	cellular response to nitrogen starvation
I	0016192	biological_process	vesicle-mediated transport
I	0016236	biological_process	macroautophagy
I	0030008	cellular_component	TRAPP complex
I	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
I	0033106	cellular_component	cis-Golgi network membrane
I	0042147	biological_process	retrograde transport, endosome to Golgi
I	0048193	biological_process	Golgi vesicle transport
I	1990070	cellular_component	TRAPPI protein complex
I	1990071	cellular_component	TRAPPII protein complex
I	1990072	cellular_component	TRAPPIII protein complex
j	0000407	cellular_component	phagophore assembly site
j	0005085	molecular_function	guanyl-nucleotide exchange factor activity
j	0005515	molecular_function	protein binding
j	0005783	cellular_component	endoplasmic reticulum
j	0005794	cellular_component	Golgi apparatus
j	0005829	cellular_component	cytosol
j	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
j	0006891	biological_process	intra-Golgi vesicle-mediated transport
j	0006914	biological_process	autophagy
j	0016192	biological_process	vesicle-mediated transport
j	0016236	biological_process	macroautophagy
j	0030008	cellular_component	TRAPP complex
j	0042147	biological_process	retrograde transport, endosome to Golgi
j	0048193	biological_process	Golgi vesicle transport
j	1990070	cellular_component	TRAPPI protein complex
j	1990071	cellular_component	TRAPPII protein complex
j	1990072	cellular_component	TRAPPIII protein complex
J	0000407	cellular_component	phagophore assembly site
J	0005085	molecular_function	guanyl-nucleotide exchange factor activity
J	0005515	molecular_function	protein binding
J	0005783	cellular_component	endoplasmic reticulum
J	0005794	cellular_component	Golgi apparatus
J	0005829	cellular_component	cytosol
J	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
J	0006891	biological_process	intra-Golgi vesicle-mediated transport
J	0006914	biological_process	autophagy
J	0016192	biological_process	vesicle-mediated transport
J	0016236	biological_process	macroautophagy
J	0030008	cellular_component	TRAPP complex
J	0042147	biological_process	retrograde transport, endosome to Golgi
J	0048193	biological_process	Golgi vesicle transport
J	1990070	cellular_component	TRAPPI protein complex
J	1990071	cellular_component	TRAPPII protein complex
J	1990072	cellular_component	TRAPPIII protein complex
k	0000407	cellular_component	phagophore assembly site
k	0003674	molecular_function	molecular_function
k	0005515	molecular_function	protein binding
k	0005634	cellular_component	nucleus
k	0005737	cellular_component	cytoplasm
k	0005783	cellular_component	endoplasmic reticulum
k	0005794	cellular_component	Golgi apparatus
k	0005829	cellular_component	cytosol
k	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
k	0006891	biological_process	intra-Golgi vesicle-mediated transport
k	0006914	biological_process	autophagy
k	0012505	cellular_component	endomembrane system
k	0016192	biological_process	vesicle-mediated transport
k	0016236	biological_process	macroautophagy
k	0030008	cellular_component	TRAPP complex
k	0042147	biological_process	retrograde transport, endosome to Golgi
k	0043229	cellular_component	intracellular organelle
k	0065003	biological_process	protein-containing complex assembly
k	1990070	cellular_component	TRAPPI protein complex
k	1990071	cellular_component	TRAPPII protein complex
k	1990072	cellular_component	TRAPPIII protein complex
K	0000407	cellular_component	phagophore assembly site
K	0003674	molecular_function	molecular_function
K	0005515	molecular_function	protein binding
K	0005634	cellular_component	nucleus
K	0005737	cellular_component	cytoplasm
K	0005783	cellular_component	endoplasmic reticulum
K	0005794	cellular_component	Golgi apparatus
K	0005829	cellular_component	cytosol
K	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
K	0006891	biological_process	intra-Golgi vesicle-mediated transport
K	0006914	biological_process	autophagy
K	0012505	cellular_component	endomembrane system
K	0016192	biological_process	vesicle-mediated transport
K	0016236	biological_process	macroautophagy
K	0030008	cellular_component	TRAPP complex
K	0042147	biological_process	retrograde transport, endosome to Golgi
K	0043229	cellular_component	intracellular organelle
K	0065003	biological_process	protein-containing complex assembly
K	1990070	cellular_component	TRAPPI protein complex
K	1990071	cellular_component	TRAPPII protein complex
K	1990072	cellular_component	TRAPPIII protein complex
l	0000139	cellular_component	Golgi membrane
l	0003924	molecular_function	GTPase activity
l	0005515	molecular_function	protein binding
l	0005525	molecular_function	GTP binding
l	0005741	cellular_component	mitochondrial outer membrane
l	0005768	cellular_component	endosome
l	0005794	cellular_component	Golgi apparatus
l	0005829	cellular_component	cytosol
l	0005935	cellular_component	cellular bud neck
l	0006887	biological_process	exocytosis
l	0006914	biological_process	autophagy
l	0015031	biological_process	protein transport
l	0016020	cellular_component	membrane
l	0016192	biological_process	vesicle-mediated transport
l	0034498	biological_process	early endosome to Golgi transport
l	0055037	cellular_component	recycling endosome

Functional Information from PROSITE/UniProt

site_id	PS00675
Number of Residues	14
Details	SIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. IVLiGDSGVGKsnL

Chain	Residue	Details
l	ILE16-LEU29

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	MOD_RES: Phosphoserine => ECO:0007744|PubMed:19779198

Chain	Residue	Details
A	SER379
A	SER387
a	SER379
a	SER387

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site_id	SWS_FT_FI2
Number of Residues	1
Details	MOD_RES: N-acetylserine => ECO:0000250|UniProtKB:P38555

Chain	Residue	Details
l	SER2
c	SER398

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