7TLZ
SARS-CoV-2 S NTD B.1.1.529 Omicron variant + S309 Local Refinement
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | S2L20 Fab light chain | polymer | 107 | 11829.1 | 1 | Homo sapiens | ||
2 | B | S2L20 Fab heavy chain | polymer | 122 | 13541.0 | 1 | Homo sapiens | ||
3 | J | Spike glycoprotein | polymer | 1274 | 141600.3 | 1 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Homo sapiens (human) | S glycoprotein,E2,Peplomer protein |
4 | J | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 6 | Chemie (NAG) |
Sequence modifications
J: 1 - 142 (UniProt: P0DTC2)
J: 143 - 212 (UniProt: P0DTC2)
J: 215 - 1205 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Val 67 | Ala 67 | variant |
- | His 69 | deletion |
- | Val 70 | deletion |
Ile 95 | Thr 95 | variant |
Asp 142 | Gly 142 | variant |
- | Val 143 | deletion |
- | Tyr 144 | deletion |
- | Tyr 145 | deletion |
PDB | External Database | Details |
---|---|---|
- | Asn 211 | deletion |
Ile 212 | Leu 212 | variant |
PDB | External Database | Details |
---|---|---|
Val 213 | - | insertion |
Arg 214 | - | insertion |
Glu 9215 | - | insertion |
Pro 9216 | - | insertion |
Glu 9217 | - | insertion |
Asp 339 | Gly 339 | variant |
Leu 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Ser 446 | Gly 446 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Arg 493 | Gln 493 | variant |
Ser 496 | Gly 496 | variant |
Arg 498 | Gln 498 | variant |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Lys 547 | Thr 547 | variant |
Gly 614 | Asp 614 | variant |
Tyr 655 | His 655 | variant |
Lys 679 | Asn 679 | variant |
His 681 | Pro 681 | variant |
Ser 682 | Arg 682 | variant |
Gly 683 | Arg 683 | variant |
Gly 685 | Arg 685 | variant |
Cys 707 | Tyr 707 | variant |
Lys 764 | Asn 764 | variant |
Tyr 796 | Asp 796 | variant |
Pro 817 | Phe 817 | variant |
Lys 856 | Asn 856 | variant |
Cys 883 | Thr 883 | variant |
Pro 892 | Ala 892 | variant |
Pro 899 | Ala 899 | variant |
Pro 942 | Ala 942 | variant |
His 954 | Gln 954 | variant |
Lys 969 | Asn 969 | variant |
Phe 981 | Leu 981 | variant |
Pro 987 | Val 987 | variant |
Tyr 1206 | - | expression tag |
Glu 1207 | - | expression tag |
Gln 1208 | - | expression tag |
Gly 1209 | - | expression tag |
Ser 1210 | - | expression tag |
Gly 1211 | - | expression tag |
Tyr 1212 | - | expression tag |
Ile 1213 | - | expression tag |
Pro 1214 | - | expression tag |
Glu 1215 | - | expression tag |
Ala 1216 | - | expression tag |
Pro 1217 | - | expression tag |
Arg 1218 | - | expression tag |
Asp 1219 | - | expression tag |
Gly 1220 | - | expression tag |
Gln 1221 | - | expression tag |
Ala 1222 | - | expression tag |
Tyr 1223 | - | expression tag |
Val 1224 | - | expression tag |
Arg 1225 | - | expression tag |
Lys 1226 | - | expression tag |
Asp 1227 | - | expression tag |
Gly 1228 | - | expression tag |
Glu 1229 | - | expression tag |
Trp 1230 | - | expression tag |
Val 1231 | - | expression tag |
Leu 1232 | - | expression tag |
Leu 1233 | - | expression tag |
Ser 1234 | - | expression tag |
Thr 1235 | - | expression tag |
Phe 1236 | - | expression tag |
Leu 1237 | - | expression tag |
Gly 1238 | - | expression tag |
Arg 1239 | - | expression tag |
Ser 1240 | - | expression tag |
Leu 1241 | - | expression tag |
Glu 1242 | - | expression tag |
Val 1243 | - | expression tag |
Leu 1244 | - | expression tag |
Phe 1245 | - | expression tag |
Gln 1246 | - | expression tag |
Gly 1247 | - | expression tag |
Pro 1248 | - | expression tag |
Gly 1249 | - | expression tag |
Ser 1250 | - | expression tag |
Gly 1251 | - | expression tag |
Gly 1252 | - | expression tag |
Leu 1253 | - | expression tag |
Asn 1254 | - | expression tag |
Asp 1255 | - | expression tag |
Ile 1256 | - | expression tag |
Phe 1257 | - | expression tag |
Glu 1258 | - | expression tag |
Ala 1259 | - | expression tag |
Gln 1260 | - | expression tag |
Lys 1261 | - | expression tag |
Ile 1262 | - | expression tag |
Glu 1263 | - | expression tag |
Trp 1264 | - | expression tag |
His 1265 | - | expression tag |
Glu 1266 | - | expression tag |
Gly 1267 | - | expression tag |
Ser 1268 | - | expression tag |
Gly 1269 | - | expression tag |
His 1270 | - | expression tag |
His 1271 | - | expression tag |
His 1272 | - | expression tag |
His 1273 | - | expression tag |
His 1274 | - | expression tag |
His 1275 | - | expression tag |
His 1276 | - | expression tag |
His 1277 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 166970.5 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 1327.2 | |
All* | Total formula weight | 168297.8 |