7TGW
Omicron spike at 3.0 A (open form)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Spike glycoprotein | polymer | 1231 | 137205.4 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | D, E, F, G, H... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
| 3 | B, C, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 21 | Chemie (NAG) |
Sequence modifications
A, B, C: 14 - 1208 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Val 67 | Ala 67 | conflict |
| - | His 69 | deletion |
| - | Val 70 | deletion |
| Ile 93 | Thr 95 | conflict |
| - | Gly 142 | deletion |
| - | Val 143 | deletion |
| - | Tyr 144 | deletion |
| Asp 140 | Tyr 145 | conflict |
| Ile 206 | - | insertion |
| Val 207 | - | insertion |
| Arg 208 | Asn 211 | conflict |
| Glu 209 | Leu 212 | conflict |
| Pro 210 | Val 213 | conflict |
| Glu 211 | Arg 214 | conflict |
| Asp 336 | Gly 339 | conflict |
| Leu 368 | Ser 371 | conflict |
| Pro 370 | Ser 373 | conflict |
| Phe 372 | Ser 375 | conflict |
| Asn 414 | Lys 417 | conflict |
| Lys 437 | Asn 440 | conflict |
| Ser 443 | Gly 446 | conflict |
| Asn 474 | Ser 477 | conflict |
| Lys 475 | Thr 478 | conflict |
| Ala 481 | Glu 484 | conflict |
| Arg 490 | Gln 493 | conflict |
| Arg 495 | Gln 498 | conflict |
| Tyr 498 | Asn 501 | conflict |
| His 502 | Tyr 505 | conflict |
| Lys 544 | Thr 547 | conflict |
| Gly 611 | Asp 614 | conflict |
| Tyr 652 | His 655 | conflict |
| Lys 676 | Asn 679 | conflict |
| His 678 | Pro 681 | conflict |
| Lys 761 | Asn 764 | conflict |
| Tyr 793 | Asp 796 | conflict |
| Pro 814 | Phe 817 | conflict |
| Lys 853 | Asn 856 | conflict |
| Pro 889 | Ala 892 | conflict |
| Pro 896 | Ala 899 | conflict |
| Pro 939 | Ala 942 | conflict |
| His 951 | Gln 954 | conflict |
| Lys 966 | Asn 969 | conflict |
| Phe 978 | Leu 981 | conflict |
| Pro 983 | Lys 986 | conflict |
| Pro 984 | Val 987 | conflict |
| Gly 1209 | - | expression tag |
| Ser 1210 | - | expression tag |
| Gly 1211 | - | expression tag |
| Tyr 1212 | - | expression tag |
| Ile 1213 | - | expression tag |
| Pro 1214 | - | expression tag |
| Glu 1215 | - | expression tag |
| Ala 1216 | - | expression tag |
| Pro 1217 | - | expression tag |
| Arg 1218 | - | expression tag |
| Asp 1219 | - | expression tag |
| Gly 1220 | - | expression tag |
| Gln 1221 | - | expression tag |
| Ala 1222 | - | expression tag |
| Tyr 1223 | - | expression tag |
| Val 1224 | - | expression tag |
| Arg 1225 | - | expression tag |
| Lys 1226 | - | expression tag |
| Asp 1227 | - | expression tag |
| Gly 1228 | - | expression tag |
| Glu 1229 | - | expression tag |
| Trp 1230 | - | expression tag |
| Val 1231 | - | expression tag |
| Leu 1232 | - | expression tag |
| Leu 1233 | - | expression tag |
| Ser 1234 | - | expression tag |
| Thr 1235 | - | expression tag |
| Phe 1236 | - | expression tag |
| Leu 1237 | - | expression tag |
| Gly 1238 | - | expression tag |
| His 1239 | - | expression tag |
| His 1240 | - | expression tag |
| His 1241 | - | expression tag |
| His 1242 | - | expression tag |
| His 1243 | - | expression tag |
| His 1244 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 411616.2 | |
| Branched | Number of molecules | 12 |
| Total formula weight | 5092.8 | |
| Non-Polymers* | Number of molecules | 21 |
| Total formula weight | 4645.4 | |
| All* | Total formula weight | 421354.4 |
