7TBE
Crystal structure of Plasmepsin X from Plasmodium vivax in complex with WM4
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D | Plasmepsin X | polymer | 379 | 42579.8 | 4 | UniProt (A0A1G4H6I9) Pfam (PF00026) UniProt (by SIFTS) (A5KAC3) In PDB | Plasmodium vivax (malaria parasite P. vivax) | |
2 | E | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
3 | F, G | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
4 | A, B, C, D | 3-[(R)-[(2E,4S)-2-imino-4-methyl-6-oxo-4-(propan-2-yl)-1,3-diazinan-1-yl](phenyl)methyl]-N-[(1S)-1-phenylethyl]benzamide | non-polymer | 482.6 | 4 | Chemie (I0I) | |||
5 | C | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
6 | water | water | 18.0 | 119 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 184 - 545 (UniProt: A0A1G4H6I9)
PDB | External Database | Details |
---|---|---|
Leu 546 | - | expression tag |
Glu 547 | - | expression tag |
Asn 548 | - | expression tag |
Leu 549 | - | expression tag |
Tyr 550 | - | expression tag |
Phe 551 | - | expression tag |
Gln 552 | - | expression tag |
Gly 553 | - | expression tag |
Asp 554 | - | expression tag |
Tyr 555 | - | expression tag |
Lys 556 | - | expression tag |
Asp 557 | - | expression tag |
Asp 558 | - | expression tag |
Asp 559 | - | expression tag |
Asp 560 | - | expression tag |
Lys 561 | - | expression tag |
His 562 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 170319.3 | |
Branched | Number of molecules | 3 |
Total formula weight | 1435.3 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 2026.5 | |
All* | Total formula weight | 173781.2 |