7T2B
Crystal structure of the 5F TCR in complex with HLA-DP4-Ply
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, F, K, P | HLA class II histocompatibility antigen, DP alpha 1 chain | polymer | 181 | 20943.3 | 4 | UniProt (P20036) Pfam (PF00993) Pfam (PF07654) In PDB | Homo sapiens (human) | DP(W3),DP(W4),HLA-SB alpha chain,MHC class II DP3-alpha,MHC class II DPA1 |
2 | B, G, L, Q | HLA class II histocompatibility antigen, DP beta 1 chain | polymer | 190 | 22074.7 | 4 | UniProt (P04440) Pfam (PF00969) Pfam (PF07654) In PDB | Homo sapiens (human) | HLA class II histocompatibility antigen,DP(W4) beta chain,MHC class II antigen DPB1 |
3 | C, H, M, R | Pneumolysin-derived peptide | polymer | 15 | 1826.0 | 4 | UniProt (Q04IN8) In PDB | Streptococcus pneumoniae | |
4 | D, I, N, S | T cell receptor, 5F, alpha chain | polymer | 207 | 22814.2 | 4 | UniProt (P01848) Pfam (PF09291) In PDB | Homo sapiens | |
5 | E, J, O, T | T cell receptor, 5F, beta chain | polymer | 241 | 27021.2 | 4 | UniProt (P01850) Pfam (PF07654) In PDB | Homo sapiens | |
6 | U, V, W | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
7 | F, G, K, P, Q... | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 8 | Chemie (NAG) | |||
8 | B, F, P, E, J... | 1,2-ETHANEDIOL | non-polymer | 62.1 | 9 | Chemie (EDO) | |||
9 | water | water | 18.0 | 10 | Chemie (HOH) |
Sequence modifications
B, G, L, Q: 1 - 190 (UniProt: P04440)
C, H, M, R: -1 - 11 (UniProt: Q04IN8)
D, I, N, S: 1 - 129 (PDB: 7T2B)
D, I, N, S: 130 - 222 (UniProt: P01848)
E, J, O, T: 1 - 128 (PDB: 7T2B)
E, J, O, T: 129 - 257 (UniProt: P01850)
PDB | External Database | Details |
---|---|---|
Ala -1 | - | expression tag |
Ser 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | cloning artifact |
Ala -2 | - | cloning artifact |
D, I, N, S: 130 - 222 (UniProt: P01848)
PDB | External Database | Details |
---|---|---|
Cys 176 | Thr 47 | engineered mutation |
E, J, O, T: 129 - 257 (UniProt: P01850)
PDB | External Database | Details |
---|---|---|
Cys 184 | Ser 56 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 20 |
Total formula weight | 378717.7 | |
Branched | Number of molecules | 3 |
Total formula weight | 1273.2 | |
Non-Polymers* | Number of molecules | 17 |
Total formula weight | 2328.3 | |
All* | Total formula weight | 382319.2 |