7SUK
Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | NA | U3 small nucleolar RNA-associated protein MPP10 | polymer | 245 | 28232.8 | 1 | UniProt (P47083) Pfam (PF04006) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNA-associated protein MPP10,M phase phosphoprotein 10 |
| 2 | SA | Nucleolar protein 56 | polymer | 413 | 45461.2 | 1 | Pfam (PF08156) Pfam (PF01798) UniProt (by SIFTS) (Q12460) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 3 | NB | Something about silencing protein 10 | polymer | 180 | 20009.5 | 1 | Pfam (PF09368) UniProt (by SIFTS) (Q12136) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 4 | L0 | 5' ETS | polymer | 700 | 225543.1 | 1 | GenBank (831416132) | Saccharomyces cerevisiae (baker's yeast) | |
| 5 | L2 | U3 snoRNA | polymer | 333 | 106503.3 | 1 | GenBank (751247007) | Saccharomyces cerevisiae (baker's yeast) | |
| 6 | L3 | 40S ribosomal protein S18-A | polymer | 127 | 14516.7 | 1 | Pfam (PF00416) UniProt (by SIFTS) (P0CX55) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 7 | L4 | 40S ribosomal protein S4-A | polymer | 228 | 25662.7 | 1 | UniProt (P0CX35) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP5,S7,Small ribosomal subunit protein eS4-A,YS6 |
| 8 | L5 | 40S ribosomal protein S5 | polymer | 213 | 23756.2 | 1 | UniProt (P26783) Pfam (PF00177) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP14,S2,Small ribosomal subunit protein uS7,YS8 |
| 9 | L7 | 40S ribosomal protein S7-A | polymer | 190 | 21658.2 | 1 | UniProt (P26786) Pfam (PF01251) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP30,RP40,Small ribosomal subunit protein eS7-A |
| 10 | L8 | 40S ribosomal protein S8-A | polymer | 200 | 22537.8 | 1 | UniProt (P0CX39) Pfam (PF01201) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP19,S14,Small ribosomal subunit protein eS8-A,YS9 |
| 11 | L9 | 40S ribosomal protein S9-A | polymer | 175 | 20093.4 | 1 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11 |
| 12 | LC | 40S ribosomal protein S16-A | polymer | 125 | 13798.1 | 1 | UniProt (P0CX51) Pfam (PF00380) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP61R,Small ribosomal subunit protein uS9-A |
| 13 | LD | 40S ribosomal protein S11-A | polymer | 156 | 17785.9 | 1 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP41,S18,Small ribosomal subunit protein uS17-A,YS12 |
| 14 | LE | 40S ribosomal protein S22-A | polymer | 127 | 14260.6 | 1 | UniProt (P0C0W1) Pfam (PF00410) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22 |
| 15 | LF | 40S ribosomal protein S24-A | polymer | 90 | 10130.7 | 1 | UniProt (P0CX31) Pfam (PF01282) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP50,Small ribosomal subunit protein eS24-A |
| 16 | LG | 40S ribosomal protein S28-A | polymer | 63 | 7116.3 | 1 | UniProt (Q3E7X9) Pfam (PF01200) In PDB | Saccharomyces cerevisiae (baker's yeast) | S33,Small ribosomal subunit protein eS28-A,YS27 |
| 17 | LH | NET1-associated nuclear protein 1 | polymer | 896 | 100911.4 | 1 | Pfam (PF00400) UniProt (by SIFTS) (Q02931) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 18 | LJ | U3 small nucleolar RNA-associated protein 15 | polymer | 513 | 57765.3 | 1 | UniProt (Q04305) Pfam (PF00400) Pfam (PF09384) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNA-associated protein 15,U three protein 15,U3 protein 15 required for transcription,t-UTP15 |
| 19 | LK | U3 small nucleolar RNA-associated protein 9 | polymer | 123 | 13282.8 | 1 | UniProt (by SIFTS) (P38882) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 20 | LL | U3 small nucleolar RNA-associated protein 5 | polymer | 555 | 62177.6 | 1 | UniProt (Q04177) Pfam (PF04003) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNA-associated protein 5,U three protein 5,U3 protein 5 required for transcription,t-UTP5 |
| 21 | LM | U3 small nucleolar RNA-associated protein 10 | polymer | 431 | 49045.0 | 1 | Pfam (PF12397) UniProt (by SIFTS) (P42945) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 22 | LN | U3 small nucleolar RNA-associated protein 4 | polymer | 748 | 84357.1 | 1 | Pfam (PF00400) UniProt (by SIFTS) (Q06679) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 23 | LO | Periodic tryptophan protein 2 | polymer | 855 | 96434.3 | 1 | UniProt (P25635) Pfam (PF00400) Pfam (PF04003) In PDB | Saccharomyces cerevisiae (baker's yeast) | U three protein 1,U3 small nucleolar RNA-associated protein 1,U3 snoRNA-associated protein 1 |
| 24 | LP | U3 small nucleolar RNA-associated protein 6 | polymer | 420 | 46689.2 | 1 | Pfam (PF08640) Pfam (PF05843) UniProt (by SIFTS) (Q02354) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 25 | LQ | U3 small nucleolar RNA-associated protein 12 | polymer | 939 | 104697.1 | 1 | Pfam (PF00400) Pfam (PF04003) UniProt (by SIFTS) (Q12220) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 26 | LS | U3 small nucleolar RNA-associated protein 18 | polymer | 594 | 66494.3 | 1 | UniProt (P40362) Pfam (PF00400) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNA-associated protein 18,U three protein 18 |
| 27 | LT | U3 small nucleolar RNA-associated protein 21 | polymer | 921 | 102793.3 | 1 | UniProt (Q06078) Pfam (PF00400) Pfam (PF04192) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNA-associated protein 21,U three protein 21 |
| 28 | LU | Protein SOF1 | polymer | 465 | 53819.6 | 1 | UniProt (P33750) Pfam (PF00400) Pfam (PF04158) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 small nucleolar RNA-associated protein SOF1,U3 snoRNA-associated protein SOF1 |
| 29 | LV | Ribosome biogenesis protein ENP2 | polymer | 362 | 41373.2 | 1 | UniProt (P48234) In PDB | Saccharomyces cerevisiae (baker's yeast) | Essential nuclear protein 2 |
| 30 | LW | U3 small nucleolar RNA-associated protein 7 | polymer | 438 | 48731.1 | 1 | UniProt (P40055) Pfam (PF00400) Pfam (PF08149) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNA-associated protein 7,U three protein 7 |
| 31 | LZ | U3 small nucleolar ribonucleoprotein protein IMP3 | polymer | 182 | 21797.3 | 1 | UniProt (P32899) Pfam (PF00163) Pfam (PF01479) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNP protein IMP3,Interacting with MPP10 protein 3 |
| 32 | NG | 40S ribosomal protein S14-B | polymer | 111 | 11645.3 | 1 | UniProt (P39516) Pfam (PF00411) UniProt (by SIFTS) (P06367) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP59B,Small ribosomal subunit protein uS11-B |
| 33 | NK | KRR1 small subunit processome component | polymer | 175 | 20171.0 | 1 | UniProt (P25586) Pfam (PF17903) Pfam (PF21800) In PDB | Saccharomyces cerevisiae (baker's yeast) | KRR-R motif-containing protein 1,Ribosomal RNA assembly protein KRR1 |
| 34 | SC, SD | rRNA 2'-O-methyltransferase fibrillarin | polymer | 247 | 27341.7 | 2 | UniProt (P15646) Pfam (PF01269) In PDB | Saccharomyces cerevisiae (baker's yeast) | Histone-glutamine methyltransferase,U3 small nucleolar RNA-associated protein NOP1,Nucleolar protein 1,U3 snoRNA-associated protein NOP1 |
| 35 | SE, SF | Ribonucloprotein | polymer | 121 | 13083.2 | 2 | UniProt (A0A6A5PW82) Pfam (PF01248) UniProt (by SIFTS) (P39990) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 36 | SG | RRP9 isoform 1 | polymer | 464 | 52527.5 | 1 | UniProt (A0A8H4BU80) Pfam (PF00400) UniProt (by SIFTS) (Q06506) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 37 | SH | RNA 3'-terminal phosphate cyclase-like protein | polymer | 360 | 39588.9 | 1 | UniProt (Q08096) Pfam (PF01137) Pfam (PF05189) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 38 | SI | Ribosome biogenesis protein BMS1 | polymer | 1123 | 127889.7 | 1 | Pfam (PF00004) Pfam (PF08142) Pfam (PF04950) UniProt (by SIFTS) (Q08965) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 39 | SJ, SK | Ribosomal RNA small subunit methyltransferase NEP1 | polymer | 236 | 26190.5 | 2 | UniProt (Q06287) Pfam (PF03587) In PDB | Saccharomyces cerevisiae (baker's yeast) | 18S rRNA (pseudouridine(1189)-N1)-methyltransferase,18S rRNA Psi1189 methyltransferase,Essential for mitotic growth protein 1,Nucleolar essential protein 1 |
| 40 | SL | rRNA-processing protein FCF1 | polymer | 183 | 21003.9 | 1 | UniProt (Q05498) Pfam (PF04900) In PDB | Saccharomyces cerevisiae (baker's yeast) | FAF1-copurifying factor 1 |
| 41 | SM | U3 small nucleolar ribonucleoprotein protein IMP4 | polymer | 290 | 33536.2 | 1 | UniProt (P53941) Pfam (PF04427) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNP protein IMP4,Interacting with MPP10 protein 4 |
| 42 | SN | Ribosome biogenesis protein UTP30 | polymer | 247 | 28576.6 | 1 | UniProt (P36144) Pfam (PF00687) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNP-associated protein UTP30 |
| 43 | SO | Pre-rRNA-processing protein PNO1 | polymer | 179 | 20189.6 | 1 | UniProt (Q99216) Pfam (PF17903) Pfam (PF22891) In PDB | Saccharomyces cerevisiae (baker's yeast) | Partner of NOB1,Ribosomal RNA-processing protein 20 |
| 44 | SQ | rRNA-processing protein FCF2 | polymer | 167 | 20139.3 | 1 | UniProt (Q12035) Pfam (PF08698) In PDB | Saccharomyces cerevisiae (baker's yeast) | FAF1 copurifying factor 2 |
| 45 | SR | 40S ribosomal protein S23-A | polymer | 104 | 11280.3 | 1 | UniProt (P0CX29) Pfam (PF00164) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP37,S28,Small ribosomal subunit protein uS12-A,YS14 |
| 46 | SS | U3 small nucleolar RNA-associated protein 14 | polymer | 197 | 21558.8 | 1 | Pfam (PF04615) UniProt (by SIFTS) (Q04500) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 47 | ST | Nucleolar complex protein 14 | polymer | 806 | 89734.9 | 1 | Pfam (PF04147) UniProt (by SIFTS) (Q99207) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 48 | SY | U3 small nucleolar RNA-associated protein 11 | polymer | 248 | 29604.1 | 1 | UniProt (B5VM59) Pfam (PF03998) UniProt (by SIFTS) (P34247) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNA-associated protein 11,U three protein 11 |
| 49 | SZ | Essential nuclear protein 1 | polymer | 261 | 29998.7 | 1 | UniProt (P38333) Pfam (PF05291) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 50 | NJ | rRNA biogenesis protein RRP5 | polymer | 265 | 30781.1 | 1 | UniProt (Q05022) Pfam (PF05843) In PDB | Saccharomyces cerevisiae (baker's yeast) | Ribosomal RNA-processing protein 5,U3 small nucleolar RNA-associated protein RRP5,U3 snoRNA-associated protein RRP5 |
| 51 | NH | U3 small nucleolar RNA-associated protein 22 | polymer | 1141 | 130146.1 | 1 | UniProt (P53254) Pfam (PF03813) Pfam (PF17403) Pfam (PF17404) Pfam (PF17405) Pfam (PF17406) Pfam (PF17407) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNA-associated protein 22,U three protein 22 |
| 52 | NI | Ribosomal RNA-processing protein 7 | polymer | 187 | 21532.4 | 1 | UniProt (P25368) Pfam (PF17799) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 53 | 8 | 18S pre-rRNA | polymer | 1807 | 582052.4 | 1 | GenBank (874346701) | Saccharomyces cerevisiae (baker's yeast) | |
| 54 | SU | Nucleolar complex protein 4 | polymer | 513 | 59433.2 | 1 | UniProt (Q06512) Pfam (PF03914) In PDB | Saccharomyces cerevisiae (baker's yeast) | U three protein 19,U3 small nucleolar RNA-associated protein 19,U3 snoRNA-associated protein 19 |
| 55 | LI | U3 small nucleolar RNA-associated protein 8 | polymer | 687 | 77467.3 | 1 | UniProt (P53276) Pfam (PF10395) Pfam (PF22542) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNA-associated protein 8,U three protein 8,U3 protein 8 required for transcription,t-UTP8 |
| 56 | ND | Bud site selection protein 21 | polymer | 60 | 7070.4 | 1 | UniProt (Q08492) Pfam (PF08297) In PDB | Saccharomyces cerevisiae (baker's yeast) | U three protein 16,U3 small nucleolar RNA-associated protein 16,U3 snoRNA-associated protein 16 |
| 57 | LR | U3 small nucleolar RNA-associated protein 13 | polymer | 811 | 90455.8 | 1 | UniProt (Q05946) Pfam (PF00400) Pfam (PF08625) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNA-associated protein 13,U three protein 13 |
| 58 | NE | Protein FAF1 | polymer | 240 | 27095.0 | 1 | UniProt (P40546) In PDB | Saccharomyces cerevisiae (baker's yeast) | Forty S assembly factor |
| 59 | SB | Nucleolar protein 58 | polymer | 436 | 47808.7 | 1 | UniProt (A6ZPE5) Pfam (PF08156) Pfam (PF01798) UniProt (by SIFTS) (Q12499) In PDB | Saccharomyces cerevisiae (baker's yeast) | Nucleolar protein 5 |
| 60 | SV | Regulator of rDNA transcription protein 14 | polymer | 92 | 10916.1 | 1 | UniProt (P40470) Pfam (PF17075) In PDB | Saccharomyces cerevisiae (baker's yeast) | |
| 61 | SP | U3 small nucleolar RNA-associated protein 20 | polymer | 2418 | 278852.7 | 1 | UniProt (P35194) Pfam (PF07539) Pfam (PF20416) In PDB | Saccharomyces cerevisiae (baker's yeast) | U3 snoRNA-associated protein 20,U three protein 20 |
| 62 | LY, LX | RNA cytidine acetyltransferase | polymer | 923 | 104469.6 | 2 | UniProt (P53914) Pfam (PF08351) Pfam (PF05127) Pfam (PF13718) Pfam (PF13725) In PDB | Saccharomyces cerevisiae (baker's yeast) | 18S rRNA cytosine acetyltransferase,Killer toxin-resistance protein 33,Ribosomal RNA cytidine acetyltransferase 1 |
| 63 | L6 | 40S ribosomal protein S6-A | polymer | 219 | 25123.2 | 1 | UniProt (P0CX37) Pfam (PF01092) In PDB | Saccharomyces cerevisiae (baker's yeast) | RP9,S10,Small ribosomal subunit protein eS6-A,YS4 |
| 64 | NF | 40S ribosomal protein S13 | polymer | 124 | 14164.6 | 1 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) In PDB | Saccharomyces cerevisiae (baker's yeast) | S27a,Small ribosomal subunit protein uS15,YS15 |
| 65 | 5 | Protein BFR2 | polymer | 534 | 61285.0 | 1 | UniProt (Q06631) Pfam (PF13339) Pfam (PF08164) In PDB | Saccharomyces cerevisiae (baker's yeast) | Brefeldin A resistance protein 2 |
| 66 | 6 | U3 small nucleolar ribonucleoprotein protein LCP5 | polymer | 357 | 40864.4 | 1 | UniProt (P40079) Pfam (PF04000) In PDB | Saccharomyces cerevisiae (baker's yeast) |
Sequence modifications
L2: 1 - 333 (GenBank: 751247007)
| PDB | External Database | Details |
|---|---|---|
| C 200 | G 200 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 70 |
| Total formula weight | 3972098.3 | |
| All* | Total formula weight | 3972098.3 |
