7SPP
Crystal structure of the SARS-CoV-2 receptor binding domain in complex with VNAR 2C02
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Spike protein S1 | polymer | 225 | 25520.7 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2 COVID-19 virus) | |
2 | C | VNAR 2C02 | polymer | 117 | 13017.5 | 1 | Squalus acanthias (llama) | ||
3 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
5 | C | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
6 | water | water | 18.0 | 128 | Chemie (HOH) |
Sequence modifications
A: 319 - 535 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
His 536 | - | expression tag |
His 537 | - | expression tag |
His 538 | - | expression tag |
His 539 | - | expression tag |
His 540 | - | expression tag |
His 541 | - | expression tag |
His 542 | - | expression tag |
His 543 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 38538.2 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 380.8 | |
All* | Total formula weight | 38919.0 |