7SN3
Structure of human SARS-CoV-2 spike glycoprotein trimer bound by neutralizing antibody C1C-A3 Fab (variable region)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1273 | 141192.2 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
2 | D, F, H | neutralizing antibody C1C-A3 heavy chain variable region | polymer | 250 | 27022.6 | 3 | Homo sapiens (human) | ||
3 | E, G, L | neutralizing antibody C1C-A3 light chain variable region | polymer | 238 | 25896.1 | 3 | Homo sapiens (human) | ||
4 | I, J, K | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
5 | A, C, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 45 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1208 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Gly 682 | Arg 682 | engineered mutation |
Ser 683 | Arg 683 | engineered mutation |
Ser 685 | Arg 685 | engineered mutation |
Pro 817 | Phe 817 | engineered mutation |
Pro 892 | Ala 892 | engineered mutation |
Pro 899 | Ala 899 | engineered mutation |
Pro 942 | Ala 942 | engineered mutation |
Pro 986 | Lys 986 | engineered mutation |
Pro 987 | Val 987 | engineered mutation |
Ser 1209 | - | expression tag |
Gly 1210 | - | expression tag |
Tyr 1211 | - | expression tag |
Ile 1212 | - | expression tag |
Pro 1213 | - | expression tag |
Glu 1214 | - | expression tag |
Ala 1215 | - | expression tag |
Pro 1216 | - | expression tag |
Arg 1217 | - | expression tag |
Asp 1218 | - | expression tag |
Gly 1219 | - | expression tag |
Gln 1220 | - | expression tag |
Ala 1221 | - | expression tag |
Tyr 1222 | - | expression tag |
Val 1223 | - | expression tag |
Arg 1224 | - | expression tag |
Lys 1225 | - | expression tag |
Asp 1226 | - | expression tag |
Gly 1227 | - | expression tag |
Glu 1228 | - | expression tag |
Trp 1229 | - | expression tag |
Val 1230 | - | expression tag |
Leu 1231 | - | expression tag |
Leu 1232 | - | expression tag |
Ser 1233 | - | expression tag |
Thr 1234 | - | expression tag |
Phe 1235 | - | expression tag |
Leu 1236 | - | expression tag |
Ser 1237 | - | expression tag |
Ala 1238 | - | expression tag |
Gly 1239 | - | expression tag |
Gly 1240 | - | expression tag |
Leu 1241 | - | expression tag |
Asn 1242 | - | expression tag |
Asp 1243 | - | expression tag |
Ile 1244 | - | expression tag |
Phe 1245 | - | expression tag |
Glu 1246 | - | expression tag |
Ala 1247 | - | expression tag |
Gln 1248 | - | expression tag |
Lys 1249 | - | expression tag |
Ile 1250 | - | expression tag |
Glu 1251 | - | expression tag |
Trp 1252 | - | expression tag |
His 1253 | - | expression tag |
Glu 1254 | - | expression tag |
Gly 1255 | - | expression tag |
Ala 1256 | - | expression tag |
Ser 1257 | - | expression tag |
Gly 1258 | - | expression tag |
Glu 1259 | - | expression tag |
Asn 1260 | - | expression tag |
Leu 1261 | - | expression tag |
Tyr 1262 | - | expression tag |
Phe 1263 | - | expression tag |
Gln 1264 | - | expression tag |
Gly 1265 | - | expression tag |
His 1266 | - | expression tag |
His 1267 | - | expression tag |
His 1268 | - | expression tag |
His 1269 | - | expression tag |
His 1270 | - | expression tag |
His 1271 | - | expression tag |
His 1272 | - | expression tag |
His 1273 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 582332.8 | |
Branched | Number of molecules | 3 |
Total formula weight | 1759.6 | |
Non-Polymers* | Number of molecules | 45 |
Total formula weight | 9954.4 | |
All* | Total formula weight | 594046.7 |