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7S83

Crystal structure of SARS CoV-2 Spike Receptor Binding Domain in complex with shark neutralizing VNARs ShAb01 and ShAb02

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1BShAb02 VNARpolymer12814343.71Ginglymostoma cirratum (nurse shark)
2CSpike protein S1polymer20523073.81UniProt (P0DTC2)
Pfam (PF09408)
In PDB
Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2)
3AShAb01 VNARpolymer13114900.41Ginglymostoma cirratum (nurse shark)
4D2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.41In PDB
GlyTouCan (G42666HT)
5CGLYCEROLnon-polymer92.11Chemie (GOL)
6waterwater18.045Chemie (HOH)
Sequence modifications
C: 331 - 527 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Gly 528-expression tag
Ser 529-expression tag
His 530-expression tag
His 531-expression tag
His 532-expression tag
His 533-expression tag
His 534-expression tag
His 535-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight52317.9
BranchedNumber of molecules1
Total formula weight424.4
Non-Polymers*Number of molecules1
Total formula weight92.1
All*Total formula weight52834.4
*Water molecules are not included.

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PDB entries from 2024-07-17

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