7S0S
M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (3) | ribosomal protein bL37 | polymer | 23 | 2710.2 | 1 | UniProt (A0QTP4) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 2 | B (B) | 16S/23S rRNA (Cytidine-2'-O)-methyltransferase TlyA | polymer | 284 | 29898.2 | 1 | UniProt (A0A045KH60) Pfam (PF01479) Pfam (PF01728) UniProt (by SIFTS) (P9WJ63) | Mycobacterium tuberculosis | Cytotoxin / haemolysin homologue TlyA,Mutant TlyA |
| 3 | C (C) | 23S rRNA | polymer | 3120 | 1012532.4 | 1 | GenBank (CP009494.1) | Mycolicibacterium smegmatis | |
| 4 | D (D) | 50S ribosomal protein L2 | polymer | 275 | 30008.4 | 1 | UniProt (A0A0D6H9F9) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (A0QSD4) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 5 | E (E) | 50S ribosomal protein L3 | polymer | 214 | 22621.9 | 1 | UniProt (A0A0D6H852) Pfam (PF00297) UniProt (by SIFTS) (A0QSD1) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 6 | F (F) | 50S ribosomal protein L4 | polymer | 210 | 22477.5 | 1 | UniProt (A0A0D6H7R4) Pfam (PF00573) UniProt (by SIFTS) (A0QSD2) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 7 | G (G) | 50S ribosomal protein L5 | polymer | 182 | 20588.7 | 1 | UniProt (A0A0D6HA71) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (A0QSG1) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 8 | H (H) | 50S ribosomal protein L6 | polymer | 176 | 19165.9 | 1 | UniProt (A0A0D6H902) Pfam (PF00347) UniProt (by SIFTS) (A0QSG4) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 9 | I (I) | 50S ribosomal protein L9 | polymer | 151 | 15949.3 | 1 | UniProt (A0A653F9J9) Pfam (PF01281) Pfam (PF03948) UniProt (by SIFTS) (A0R7F6) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 10 | J (J) | 50S ribosomal protein L10 | polymer | 126 | 13095.0 | 1 | UniProt (A0A0D6H7F9) Pfam (PF00466) UniProt (by SIFTS) (A0QS62) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 11 | K (K) | 50S ribosomal protein L11 | polymer | 133 | 14109.2 | 1 | UniProt (A0A0D6H7I7) Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (A0QS45) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 12 | L (L) | 50S ribosomal protein L13 | polymer | 146 | 16015.5 | 1 | UniProt (A0A653FEZ4) Pfam (PF00572) UniProt (by SIFTS) (A0QSP8) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 13 | M (M) | 50S ribosomal protein L14 | polymer | 122 | 13400.6 | 1 | UniProt (A0A0D6HA57) Pfam (PF00238) UniProt (by SIFTS) (A0QSF9) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 14 | N (N) | 50S ribosomal protein L15 | polymer | 145 | 15384.0 | 1 | UniProt (A0A653FF82) Pfam (PF00828) UniProt (by SIFTS) (A0QSG8) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 15 | O (O) | 50S ribosomal protein L16 | polymer | 136 | 15498.9 | 1 | UniProt (A0A0D6H8A3) Pfam (PF00252) UniProt (by SIFTS) (A0QSD8) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 16 | P (P) | 50S ribosomal protein L17 | polymer | 118 | 13210.3 | 1 | UniProt (A0A0D6HA74) Pfam (PF01196) UniProt (by SIFTS) (A0QSL9) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 17 | Q (Q) | 50S ribosomal protein L18 | polymer | 126 | 13580.5 | 1 | UniProt (A0A0D6HAD5) Pfam (PF00861) UniProt (by SIFTS) (A0QSG5) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 18 | R (R) | 50S ribosomal protein L19 | polymer | 113 | 12892.8 | 1 | UniProt (A0A0D6HUB6) Pfam (PF01245) UniProt (by SIFTS) (A0QV42) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 19 | S (S) | 50S ribosomal protein L20 | polymer | 124 | 14035.2 | 1 | UniProt (A0A0D6IFR3) Pfam (PF00453) UniProt (by SIFTS) (A0QYU6) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 20 | T (T) | 50S ribosomal protein L21 | polymer | 100 | 10724.4 | 1 | UniProt (A0A0D6IQ37) Pfam (PF00829) UniProt (by SIFTS) (A0R151) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 21 | U (U) | 50S ribosomal protein L22 | polymer | 114 | 12408.2 | 1 | UniProt (O06115) Pfam (PF00237) UniProt (by SIFTS) (A0QSD6) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 22 | V (V) | 50S ribosomal protein L23 | polymer | 97 | 10748.4 | 1 | UniProt (A0A0D6H9F4) Pfam (PF00276) UniProt (by SIFTS) (A0QSD3) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 23 | W (W) | 50S ribosomal protein L24 | polymer | 105 | 11228.9 | 1 | UniProt (A0A0D6HA97) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (A0QSG0) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 24 | X (X) | 50S ribosomal protein L25 | polymer | 192 | 20331.7 | 1 | UniProt (A0A0D6IY62) Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (A0R3D2) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | General stress protein CTC |
| 25 | Y (Y) | 50S ribosomal protein L27 | polymer | 79 | 8322.5 | 1 | UniProt (A0A0D6IQ33) Pfam (PF01016) UniProt (by SIFTS) (A0R150) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 26 | Z (Z) | 50S ribosomal protein L28 | polymer | 63 | 6759.8 | 1 | UniProt (A0A0D6HVA7) Pfam (PF00830) UniProt (by SIFTS) (A0QV03) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 27 | AA (a) | 50S ribosomal protein L29 | polymer | 64 | 7590.6 | 1 | UniProt (A0A0D6H9R7) Pfam (PF00831) UniProt (by SIFTS) (A0QSD9) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 28 | BA (b) | 50S ribosomal protein L30 | polymer | 59 | 6761.8 | 1 | UniProt (A0A0D6HAE9) Pfam (PF00327) UniProt (by SIFTS) (A0QSG7) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 29 | CA (c) | 50S ribosomal protein L32 | polymer | 54 | 6050.1 | 1 | UniProt (A0A0D6IYP7) Pfam (PF01783) UniProt (by SIFTS) (A0R3I9) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 30 | DA (d) | 50S ribosomal protein L33 | polymer | 49 | 5833.8 | 1 | UniProt (A0A0D6H541) Pfam (PF00471) UniProt (by SIFTS) (A0QS39) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 31 | EA (e) | 50S ribosomal protein L34 | polymer | 46 | 5391.4 | 1 | UniProt (P0C562) Pfam (PF00468) UniProt (by SIFTS) (A0R7K0) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 32 | FA (f) | 50S ribosomal protein L35 | polymer | 63 | 7167.3 | 1 | UniProt (A0A0D6IFR9) Pfam (PF01632) UniProt (by SIFTS) (A0QYU7) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 33 | GA (g) | 50S ribosomal protein L36 | polymer | 37 | 4341.3 | 1 | UniProt (A0QSL4) Pfam (PF00444) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 34 | HA (h) | 50S ribosomal protein L31 | polymer | 48 | 5258.0 | 1 | UniProt (A0A0D6IUC0) Pfam (PF01197) UniProt (by SIFTS) (A0R215) | Mycolicibacterium smegmatis (Mycobacterium smegmatis) | |
| 35 | IA (i) | 5S rRNA | polymer | 118 | 38061.8 | 1 | GenBank (967054) | Mycolicibacterium smegmatis | |
| 36 | AB, AC, AD, AE, AF... (C, D, E, N, O...) | MAGNESIUM ION | non-polymer | 24.3 | 402 | Chemie (MG) | |||
| 37 | MP, NP, OP, PP (Z, d, g, h) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) |
Sequence modifications
B: 1 - 268 (UniProt: A0A045KH60)
| PDB | External Database | Details |
|---|---|---|
| Met -15 | - | initiating methionine |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| His -9 | - | expression tag |
| Ala -8 | - | expression tag |
| Ser -7 | - | expression tag |
| Gly -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Val -4 | - | expression tag |
| Pro -3 | - | expression tag |
| Arg -2 | - | expression tag |
| Gly -1 | - | expression tag |
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 35 |
| Total formula weight | 1484154.6 | |
| Non-Polymers* | Number of molecules | 406 |
| Total formula weight | 10032.2 | |
| All* | Total formula weight | 1494186.8 |
