7RDF
Crystal structure of Pseudomonas aeruginosa D-Arginine Dehydrogenase Y249F co-crystallized in the presence of D-arginine
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | FAD-dependent catabolic D-arginine dehydrogenase DauA | polymer | 375 | 40594.7 | 1 | UniProt (Q9HXE3) Pfam (PF01266) | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | D-arginine dehydrogenase,DADH,D-arginine utilization protein A,Dau |
| 2 | B (A) | [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-5-[5-[(~{E})-4-carbamimidamidobut-2-enoyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-1~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate | non-polymer | 912.7 | 1 | Chemie (4R2) | |||
| 3 | C (A) | 6-HYDROXY-FLAVIN-ADENINE DINUCLEOTIDE | non-polymer | 801.5 | 1 | Chemie (6FA) | |||
| 4 | D, E, F (A) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
| 5 | G (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 6 | H (A) | water | water | 18.0 | 402 | Chemie (HOH) |
Sequence modifications
A: 1 - 375 (UniProt: Q9HXE3)
| PDB | External Database | Details |
|---|---|---|
| Phe 249 | Tyr 249 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 40594.7 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 2096.6 | |
| All* | Total formula weight | 42691.4 |
