7R7C
State E2 nucleolar 60S ribosomal biogenesis intermediate - L1 stalk local model
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 1 | 25S rRNA | polymer | 226 | 72858.9 | 1 | Saccharomyces cerevisiae BY4741 | ||
| 2 | l | 60S ribosome subunit biogenesis protein NIP7 | polymer | 181 | 20411.7 | 1 | UniProt (Q08962) Pfam (PF17833) Pfam (PF03657) In PDB | Saccharomyces cerevisiae BY4741 | Nuclear import protein 7 |
| 3 | m | Ribosome biogenesis protein ERB1 | polymer | 63 | 6833.6 | 1 | UniProt (A0A6V8S2P3) UniProt (by SIFTS) (Q04660) In PDB | Saccharomyces cerevisiae BY4741 | Eukaryotic ribosome biogenesis protein 1 |
| 4 | q | 25S rRNA (cytosine(2870)-C(5))-methyltransferase | polymer | 618 | 69912.2 | 1 | UniProt (P40991) Pfam (PF01189) In PDB | Saccharomyces cerevisiae BY4741 | Nucleolar protein 2 |
| 5 | r | Ribosome biogenesis protein NSA2 homolog | polymer | 104 | 11673.7 | 1 | UniProt (A0A6A5PXG0) Pfam (PF01201) UniProt (by SIFTS) (P40078) In PDB | Saccharomyces cerevisiae BY4741 | |
| 6 | w | 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase | polymer | 12 | 1520.8 | 1 | UniProt (P25582) In PDB | Saccharomyces cerevisiae BY4741 | 2'-O-ribose RNA methyltransferase SPB1,AdoMet-dependent rRNA methyltransferase SPB1,S-adenosyl-L-methionine-dependent methyltransferase,Suppressor of PAB1 protein 1 |
| 7 | 7 | 60S ribosomal subunit assembly/export protein LOC1 | polymer | 204 | 23652.6 | 1 | UniProt (P43586) In PDB | Saccharomyces cerevisiae BY4741 | Localization of ASH1 mRNA protein 1 |
| 8 | A | Ribosome biogenesis protein BRX1 | polymer | 291 | 33585.4 | 1 | UniProt (Q08235) Pfam (PF04427) In PDB | Saccharomyces cerevisiae BY4741 | |
| 9 | J | rRNA-processing protein EBP2 | polymer | 96 | 11444.4 | 1 | UniProt (A0A7I9FH46) Pfam (PF05890) UniProt (by SIFTS) (P36049) In PDB | Saccharomyces cerevisiae BY4741 | |
| 10 | b | Nucleolar GTP-binding protein 1 | polymer | 54 | 6401.9 | 1 | Pfam (PF17835) UniProt (by SIFTS) (Q02892) In PDB | Saccharomyces cerevisiae BY4741 | |
| 11 | a | 60S ribosomal protein L1-A | polymer | 217 | 24538.8 | 1 | Pfam (PF00687) UniProt (by SIFTS) (P0CX43) In PDB | Saccharomyces cerevisiae BY4741 |
Sequence modifications
r: 149 - 260 (UniProt: A0A6A5PXG0)
| PDB | External Database | Details |
|---|---|---|
| - | Gly 229 | deletion |
| - | Met 230 | deletion |
| - | Val 231 | deletion |
| - | Thr 232 | deletion |
| - | Ala 233 | deletion |
| - | Gly 234 | deletion |
| - | Gly 235 | deletion |
| - | Lys 236 | deletion |
| - | Val 237 | deletion |
| Asp 261 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 11 |
| Total formula weight | 282834.0 | |
| All* | Total formula weight | 282834.0 |
