7R4Q
The SARS-CoV-2 spike in complex with the 1.29 neutralizing nanobody
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1264 | 140113.9 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | D, E | Camel-derived nanobody 1.29 | polymer | 126 | 13348.6 | 2 | Camelus dromedarius | ||
3 | F, G, H, I, J | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 5 | In PDB GlyTouCan (G42666HT) | |||
4 | B, A, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 33 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1208 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Gly 682 | Arg 682 | variant |
Ser 683 | Arg 683 | variant |
Ser 685 | Arg 685 | variant |
Pro 942 | Ala 942 | variant |
Pro 986 | Lys 986 | engineered mutation |
Pro 987 | Val 987 | engineered mutation |
Gly 1209 | - | expression tag |
Ser 1210 | - | expression tag |
Gly 1211 | - | expression tag |
Ser 1212 | - | expression tag |
Gly 1213 | - | expression tag |
Tyr 1214 | - | expression tag |
Ile 1215 | - | expression tag |
Pro 1216 | - | expression tag |
Glu 1217 | - | expression tag |
Ala 1218 | - | expression tag |
Pro 1219 | - | expression tag |
Arg 1220 | - | expression tag |
Asp 1221 | - | expression tag |
Gly 1222 | - | expression tag |
Gln 1223 | - | expression tag |
Ala 1224 | - | expression tag |
Tyr 1225 | - | expression tag |
Val 1226 | - | expression tag |
Arg 1227 | - | expression tag |
Lys 1228 | - | expression tag |
Asp 1229 | - | expression tag |
Gly 1230 | - | expression tag |
Glu 1231 | - | expression tag |
Trp 1232 | - | expression tag |
Val 1233 | - | expression tag |
Leu 1234 | - | expression tag |
Leu 1235 | - | expression tag |
Ser 1236 | - | expression tag |
Thr 1237 | - | expression tag |
Phe 1238 | - | expression tag |
Leu 1239 | - | expression tag |
Gly 1240 | - | expression tag |
Thr 1241 | - | expression tag |
Glu 1242 | - | expression tag |
Asn 1243 | - | expression tag |
Leu 1244 | - | expression tag |
Tyr 1245 | - | expression tag |
Phe 1246 | - | expression tag |
Gln 1247 | - | expression tag |
Gly 1248 | - | expression tag |
Asp 1249 | - | expression tag |
Tyr 1250 | - | expression tag |
Lys 1251 | - | expression tag |
Asp 1252 | - | expression tag |
Asp 1253 | - | expression tag |
Asp 1254 | - | expression tag |
Asp 1255 | - | expression tag |
Lys 1256 | - | expression tag |
Gly 1257 | - | expression tag |
Ser 1258 | - | expression tag |
His 1259 | - | expression tag |
His 1260 | - | expression tag |
His 1261 | - | expression tag |
His 1262 | - | expression tag |
His 1263 | - | expression tag |
His 1264 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 447038.9 | |
Branched | Number of molecules | 5 |
Total formula weight | 2122.0 | |
Non-Polymers* | Number of molecules | 33 |
Total formula weight | 7299.9 | |
All* | Total formula weight | 456460.8 |