7QWS
Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | s | Nascent chain tubulin beta | polymer | 24 | 2060.5 | 1 | Homo sapiens | ||
2 | t | Nascent polypeptide-associated complex subunit alpha | polymer | 215 | 23406.8 | 1 | UniProt (Q13765) Pfam (PF01849) Pfam (PF19026) In PDB | Oryctolagus cuniculus (rabbit) | NAC-alpha,Alpha-NAC |
3 | u | Transcription factor BTF3 | polymer | 162 | 17724.0 | 1 | UniProt (G1TKK2) Pfam (PF01849) In PDB | Oryctolagus cuniculus (rabbit) | NacB |
4 | A | 60S ribosomal protein L8 | polymer | 245 | 26701.3 | 1 | UniProt (A0A5F9D5B2) Pfam (PF03947) In PDB | Oryctolagus cuniculus (rabbit) | |
5 | b | 60S ribosomal protein L29 | polymer | 223 | 24608.2 | 1 | UniProt (G1TN82) Pfam (PF01779) UniProt (by SIFTS) (G1SGR6) In PDB | Oryctolagus cuniculus (rabbit) | |
6 | B | Ribosomal protein L3 | polymer | 403 | 46108.0 | 1 | UniProt (G1TL06) Pfam (PF00297) In PDB | Oryctolagus cuniculus (rabbit) | uL3 |
7 | c | 60S ribosomal protein L30 | polymer | 115 | 12821.1 | 1 | UniProt (G1TDL2) Pfam (PF01248) In PDB | Oryctolagus cuniculus (rabbit) | |
8 | C | 60S ribosomal protein L4 | polymer | 413 | 46388.9 | 1 | UniProt (G1SVW5) Pfam (PF00573) Pfam (PF14374) In PDB | Oryctolagus cuniculus (rabbit) | |
9 | d | Ribosomal protein L31 | polymer | 125 | 14494.9 | 1 | UniProt (G1SHG0) Pfam (PF01198) In PDB | Oryctolagus cuniculus (rabbit) | eL31 |
10 | D | Ribosomal_L18_c domain-containing protein | polymer | 297 | 34481.8 | 1 | UniProt (G1SYJ6) UniProt (by SIFTS) (P19949) In PDB | Oryctolagus cuniculus (rabbit) | |
11 | e | Ribosomal protein L32 | polymer | 157 | 18350.0 | 1 | UniProt (G1TUN8) Pfam (PF01655) In PDB | Oryctolagus cuniculus (rabbit) | eL32 |
12 | E | 60S ribosomal protein L6 | polymer | 291 | 33055.3 | 1 | UniProt (G1SKF7) Pfam (PF03868) Pfam (PF01159) In PDB | Oryctolagus cuniculus (rabbit) | |
13 | f | 60S ribosomal protein L35a | polymer | 110 | 12580.8 | 1 | UniProt (G1SF08) Pfam (PF01247) In PDB | Oryctolagus cuniculus (rabbit) | eL33 |
14 | F | uL30 | polymer | 225 | 26662.8 | 1 | UniProt (G1SV32) Pfam (PF08079) Pfam (PF00327) In PDB | Oryctolagus cuniculus (rabbit) | |
15 | g | 60S ribosomal protein L34 | polymer | 129 | 14557.5 | 1 | UniProt (G1U945) Pfam (PF01199) UniProt (by SIFTS) (G1TXG5) In PDB | Oryctolagus cuniculus (rabbit) | |
16 | G | 60S ribosomal protein L7a | polymer | 319 | 36267.6 | 1 | UniProt (G1STW0) Pfam (PF01248) In PDB | Oryctolagus cuniculus (rabbit) | |
17 | h | 60S ribosomal protein L35 | polymer | 123 | 14566.6 | 1 | UniProt (G1SIT5) Pfam (PF00831) In PDB | Oryctolagus cuniculus (rabbit) | uL29 |
18 | H | 60S ribosomal protein L9 | polymer | 192 | 21871.4 | 1 | UniProt (G1SWI6) Pfam (PF00347) In PDB | Oryctolagus cuniculus (rabbit) | |
19 | i | 60S ribosomal protein L36 | polymer | 102 | 11888.4 | 1 | UniProt (G1TTQ5) Pfam (PF01158) In PDB | Oryctolagus cuniculus (rabbit) | |
20 | I | 60S ribosomal protein L10 | polymer | 214 | 24643.1 | 1 | UniProt (B7NZQ2) Pfam (PF00252) In PDB | Oryctolagus cuniculus (rabbit) | Ribosomal protein L10 (Predicted) |
21 | j | Ribosomal protein L37 | polymer | 97 | 11111.0 | 1 | UniProt (U3KPD5) Pfam (PF01907) In PDB | Oryctolagus cuniculus (rabbit) | |
22 | J | Ribosomal protein L11 | polymer | 178 | 20288.5 | 1 | UniProt (G1TUB8) Pfam (PF00281) Pfam (PF00673) In PDB | Oryctolagus cuniculus (rabbit) | |
23 | k | Ribosomal protein L38 | polymer | 69 | 8107.8 | 1 | Oryctolagus cuniculus (rabbit) | ||
24 | L | Ribosomal protein L13 | polymer | 210 | 24216.5 | 1 | Oryctolagus cuniculus (rabbit) | ||
25 | l | Ribosomal protein L39 | polymer | 51 | 6426.8 | 1 | UniProt (G1SYU7) Pfam (PF00832) In PDB | Oryctolagus cuniculus (rabbit) | eL39 |
26 | M | 60S ribosomal protein L14 | polymer | 218 | 23810.4 | 1 | UniProt (U3KNW6) Pfam (PF01929) UniProt (by SIFTS) (G1SZ12) In PDB | Oryctolagus cuniculus (rabbit) | |
27 | m | Ribosomal protein L40 | polymer | 128 | 14758.4 | 1 | Oryctolagus cuniculus (rabbit) | ||
28 | N | Ribosomal protein L15 | polymer | 204 | 24207.3 | 1 | UniProt (G1T0C1) Pfam (PF00827) In PDB | Oryctolagus cuniculus (rabbit) | |
29 | n | 60s ribosomal protein l41 | polymer | 25 | 3473.5 | 1 | UniProt (A0A087WNH4) Pfam (PF05162) In PDB | Oryctolagus cuniculus (rabbit) | eL41 |
30 | O | Ribosomal protein L13a | polymer | 500 | 56501.6 | 1 | Oryctolagus cuniculus (rabbit) | ||
31 | o | eL42 | polymer | 141 | 16130.2 | 1 | UniProt (A0A5F9D391) Pfam (PF00935) In PDB | Oryctolagus cuniculus (rabbit) | |
32 | P | 60S ribosomal protein L17 | polymer | 153 | 17758.7 | 1 | Oryctolagus cuniculus (rabbit) | ||
33 | p | eL43 | polymer | 92 | 10299.4 | 1 | UniProt (G1SY53) Pfam (PF01780) In PDB | Oryctolagus cuniculus (rabbit) | |
34 | Q | Ribosomal protein L18 | polymer | 187 | 21457.4 | 1 | Oryctolagus cuniculus (rabbit) | ||
35 | r | 60S ribosomal protein L28 | polymer | 137 | 15783.6 | 1 | UniProt (G1U7L1) Pfam (PF01778) In PDB | Oryctolagus cuniculus (rabbit) | eL28 |
36 | R | 60S ribosomal protein L19 | polymer | 196 | 23535.3 | 1 | UniProt (Q3T0W9) Pfam (PF01280) In PDB | Oryctolagus cuniculus (rabbit) | eL19 |
37 | S | Ribosomal protein L18a | polymer | 175 | 20696.4 | 1 | Oryctolagus cuniculus (rabbit) | ||
38 | T | 60S ribosomal protein L21 | polymer | 160 | 18610.0 | 1 | UniProt (G1SHQ2) Pfam (PF01157) In PDB | Oryctolagus cuniculus (rabbit) | eL21 |
39 | U | Ribosomal protein L22 | polymer | 105 | 12209.0 | 1 | Oryctolagus cuniculus (rabbit) | ||
40 | V | Ribosomal protein L23 | polymer | 140 | 14892.5 | 1 | UniProt (G1T6D1) Pfam (PF00238) In PDB | Oryctolagus cuniculus (rabbit) | |
41 | W | Ribosomal protein L24 | polymer | 157 | 17825.1 | 1 | UniProt (G1SE28) Pfam (PF01246) In PDB | Oryctolagus cuniculus (rabbit) | eL24 |
42 | 5 | 28S rRNA | polymer | 4754 | 1539032.0 | 1 | Oryctolagus cuniculus (rabbit) | ||
43 | X | Ribosomal_L23eN domain-containing protein | polymer | 156 | 17768.2 | 1 | UniProt (G1SE76) Pfam (PF03939) Pfam (PF00276) In PDB | Oryctolagus cuniculus (rabbit) | uL23 |
44 | 7 | 5S rRNA | polymer | 120 | 38691.9 | 1 | GenBank (4CXE_4) | Oryctolagus cuniculus (rabbit) | |
45 | Y | Ribosomal protein L26 | polymer | 145 | 17303.4 | 1 | UniProt (G1SQH0) Pfam (PF16906) Pfam (PF00467) In PDB | Oryctolagus cuniculus (rabbit) | |
46 | 8 | 5.8S rRNA | polymer | 156 | 50143.6 | 1 | GenBank (4CXE_3) | Oryctolagus cuniculus (rabbit) | |
47 | K | Tetratricopeptide repeat protein 5 | polymer | 440 | 48988.4 | 1 | UniProt (Q8N0Z6) Pfam (PF16669) In PDB | Homo sapiens (human) | TPR repeat protein 5,Stress-responsive activator of p300,Strap |
48 | Z | 60S ribosomal protein L27 | polymer | 136 | 15835.8 | 1 | UniProt (G1TXF6) Pfam (PF00467) Pfam (PF01777) In PDB | Oryctolagus cuniculus (rabbit) | |
49 | a | 60S ribosomal protein L27a | polymer | 148 | 16620.6 | 1 | UniProt (G1SNY0) Pfam (PF00828) In PDB | Oryctolagus cuniculus (rabbit) | uL15 |
50 | o, p, g, j, m | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
51 | 5 | MAGNESIUM ION | non-polymer | 24.3 | 97 | Chemie (MG) |
Sequence modifications
A: 1 - 245 (UniProt: A0A5F9D5B2)
c: 1 - 115 (UniProt: G1TDL2)
E: -5 - 284 (UniProt: G1SKF7)
F: 26 - 250 (UniProt: G1SV32)
a: 2 - 148 (UniProt: G1SNY0)
PDB | External Database | Details |
---|---|---|
Lys 46 | - | insertion |
Asp 47 | - | insertion |
Ile 48 | - | insertion |
Ile 49 | - | insertion |
His 50 | - | insertion |
Asp 51 | - | insertion |
Pro 52 | - | insertion |
Gly 53 | - | insertion |
Arg 54 | - | insertion |
Gly 55 | - | insertion |
Ala 56 | - | insertion |
Pro 57 | - | insertion |
Leu 58 | - | insertion |
Ala 59 | - | insertion |
Lys 60 | - | insertion |
Val 61 | - | insertion |
Val 62 | - | insertion |
Phe 63 | - | insertion |
Arg 64 | - | insertion |
Asp 65 | - | insertion |
Pro 66 | - | insertion |
Tyr 67 | - | insertion |
Arg 68 | - | insertion |
Phe 69 | - | insertion |
PDB | External Database | Details |
---|---|---|
Thr 34 | Ser 34 | conflict |
PDB | External Database | Details |
---|---|---|
Arg 126 | Lys 133 | conflict |
Gln 217 | Lys 224 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 175 | Thr 174 | conflict |
Gly 185 | Asn 184 | conflict |
Arg 202 | His 201 | conflict |
Glu 233 | Gly 232 | conflict |
PDB | External Database | Details |
---|---|---|
Met 1 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 49 |
Total formula weight | 2589722.2 | |
Non-Polymers* | Number of molecules | 102 |
Total formula weight | 2684.6 | |
All* | Total formula weight | 2592406.9 |