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7QIZ

Specific features and methylation sites of a plant 80S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1D60S ribosomal protein L8polymer26028331.91UniProt (P29766)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Solanum lycopersicum (tomato)L2,Ribosomal protein TL2
2FRibos_L4_asso_C domain-containing proteinpolymer40644852.01UniProt (A0A3Q7HW81)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Solanum lycopersicum (tomato)
3ERibosomal protein L3polymer38944518.21UniProt (Q6SKP4)
Pfam (PF00297)
In PDB
Solanum lycopersicum (tomato)
4GRibosomal_L18_c domain-containing proteinpolymer30134667.31UniProt (A0A3Q7H274)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Solanum lycopersicum (tomato)
5HRibosomal_L6e_N domain-containing proteinpolymer22925621.51UniProt (A0A3Q7GMA5)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Solanum lycopersicum (tomato)
6IThaliana 60S ribosomal protein L7polymer24228058.01UniProt (M1BRF8)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Solanum lycopersicum (tomato)
7JRibosomal_L7Ae domain-containing proteinpolymer25829362.11UniProt (A0A3Q7GV73)
Pfam (PF01248)
In PDB
Solanum lycopersicum (tomato)
8K60S ribosomal protein uL6polymer19422004.61UniProt (A0A3Q7JDZ0)
Pfam (PF00347)
In PDB
Solanum lycopersicum (tomato)
9L60S ribosomal protein L10polymer22024913.31UniProt (Q3SC85)
Pfam (PF00252)
In PDB
Solanum lycopersicum (tomato)
10M60S ribosomal protein uL5polymer18120826.21UniProt (K4CG62)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Solanum lycopersicum (tomato)
11N60S ribosomal protein L13polymer20623620.61UniProt (A0A3Q7JCM5)
Pfam (PF01294)
In PDB
Solanum lycopersicum (tomato)
12ORibosomal_L14e domain-containing proteinpolymer13315400.41UniProt (A0A3Q7J0J5)
Pfam (PF01929)
In PDB
Solanum lycopersicum (tomato)
13PRibosomal protein L15polymer20424233.31UniProt (A0A3Q7HQH0)
Pfam (PF00827)
In PDB
Solanum lycopersicum (tomato)
14QPectinesterasepolymer20623613.21UniProt (A0A3Q7HGG4)
Pfam (PF00572)
In PDB
Solanum lycopersicum (tomato)
15R50S ribosomal protein L22, chloroplasticpolymer17319785.71UniProt (A0A3Q7FNQ5)
Pfam (PF00237)
In PDB
Solanum lycopersicum (tomato)
16SRibosomal_L18e/L15P domain-containing proteinpolymer18720764.51UniProt (A0A3Q7I5W4)
Pfam (PF17135)
In PDB
Solanum lycopersicum (tomato)
17TRibosomal protein L19polymer21324786.61UniProt (A0A3Q7GQ29)
Pfam (PF01280)
In PDB
Solanum lycopersicum (tomato)
18U60S ribosomal protein L18apolymer17821476.31UniProt (A0A3Q7IGB1)
Pfam (PF01775)
In PDB
Solanum lycopersicum (tomato)
19V60S ribosomal protein eL21polymer16418715.81UniProt (A0A3Q7IJQ0)
Pfam (PF01157)
In PDB
Solanum lycopersicum (tomato)
20W60S ribosomal protein eL22polymer12413996.11UniProt (A0A3Q7I7E8)
Pfam (PF01776)
In PDB
Solanum lycopersicum (tomato)
21X60S ribosomal protein uL14polymer14015040.91UniProt (K4CUW3)
Pfam (PF00238)
In PDB
Solanum lycopersicum (tomato)
22YTRASH domain-containing proteinpolymer16518712.11UniProt (A0A3Q7IN69)
Pfam (PF01246)
In PDB
Solanum lycopersicum (tomato)
23ZRibosomal_L23eN domain-containing proteinpolymer15417427.71UniProt (A0A3Q7INK3)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Solanum lycopersicum (tomato)
24aKOW domain-containing proteinpolymer14616750.51UniProt (A0A3Q7FBC6)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Solanum lycopersicum (tomato)
25b60S ribosomal protein L27polymer13515698.61UniProt (A0A3Q7GZ83)
Pfam (PF01777)
In PDB
Solanum lycopersicum (tomato)
26cRibosomal_L18e/L15P domain-containing proteinpolymer14816479.41UniProt (A0A3Q7GZ10)
Pfam (PF00828)
In PDB
Solanum lycopersicum (tomato)
27d60S ribosomal protein L29polymer606989.91UniProt (A0A3Q7GK12)
Pfam (PF01779)
In PDB
Solanum lycopersicum (tomato)
28e60S ribosomal protein eL30polymer11212367.51Solanum lycopersicum (tomato)
29f60S ribosomal protein eL31polymer12013890.21UniProt (A0A3Q7JRW8)
Pfam (PF01198)
In PDB
Solanum lycopersicum (tomato)
30g60S ribosomal protein eL32polymer13315673.51UniProt (A0A3Q7F2B5)
Pfam (PF01655)
In PDB
Solanum lycopersicum (tomato)
31h60S ribosomal protein eL33polymer11212952.21UniProt (A0A3Q7FPS6)
Pfam (PF01247)
In PDB
Solanum lycopersicum (tomato)
32i60S ribosomal protein eL34polymer12013815.41UniProt (A0A3Q7GDM4)
Pfam (PF01199)
In PDB
Solanum lycopersicum (tomato)
33jSimilar to 60S ribosomal protein L35polymer12314324.41UniProt (Q53U38)
Pfam (PF00831)
In PDB
Solanum lycopersicum (tomato)
34k60S ribosomal protein L36polymer11012406.91UniProt (A0A3Q7GUG2)
Pfam (PF01158)
In PDB
Solanum lycopersicum (tomato)
35lRibosomal protein L37polymer9510809.61UniProt (A0A3Q7FV98)
Pfam (PF01907)
In PDB
Solanum lycopersicum (tomato)
36m60S ribosomal protein L38polymer698101.71UniProt (P46291)
Pfam (PF01781)
In PDB
Solanum lycopersicum (tomato)
37n60S ribosomal protein eL39polymer516489.81UniProt (A0A3Q7J415)
Pfam (PF00832)
In PDB
Solanum lycopersicum (tomato)
38oUbiquitinpolymer12814745.41UniProt (K4B017)
Pfam (PF00240)
Pfam (PF01020)
In PDB
Solanum lycopersicum (tomato)
39p60S ribosomal protein eL42polymer10512037.31UniProt (A0A3Q7FPL2)
Pfam (PF00935)
In PDB
Solanum lycopersicum (tomato)
40q60S ribosomal protein eL43polymer9210280.11UniProt (K4CND1)
Pfam (PF01780)
In PDB
Solanum lycopersicum (tomato)
41rRibosomal_L28e domain-containing proteinpolymer14316018.61UniProt (A0A3Q7FVJ9)
Pfam (PF01778)
In PDB
Solanum lycopersicum (tomato)
42stRNApolymer2589.41Solanum lycopersicum (tomato)
43225S rRNApolymer33911098453.01GenBank (2090998066)Solanum lycopersicum (tomato)
4455S rRNApolymer12038634.91GenBank (19159)Solanum lycopersicum (tomato)
4585.8S rRNApolymer16553173.61GenBank (1418500722)Solanum lycopersicum (tomato)
46S218Spolymer1808583609.11Solanum lycopersicum (tomato)
47NAKH type-2 domain-containing proteinpolymer23926828.41UniProt (A0A3Q7HBR5)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Solanum lycopersicum (tomato)
48OARibosomal_S7 domain-containing proteinpolymer21123686.21UniProt (A0A3Q7IVL4)
Pfam (PF00177)
In PDB
Solanum lycopersicum (tomato)
49PAS10_plectin domain-containing proteinpolymer18019882.51UniProt (A0A3Q7JYM3)
Pfam (PF03501)
In PDB
Solanum lycopersicum (tomato)
50QA40S ribosomal protein uS19polymer15117352.51UniProt (A0A3Q7F5X2)
Pfam (PF00203)
In PDB
Solanum lycopersicum (tomato)
51RA40S ribosomal protein uS9polymer14716805.81UniProt (A0A3Q7GDB0)
Pfam (PF00380)
In PDB
Solanum lycopersicum (tomato)
52TA40S ribosomal protein uS13polymer15217574.51UniProt (A0A3Q7FJL7)
Pfam (PF00416)
In PDB
Solanum lycopersicum (tomato)
53UA40S ribosomal protein eS19polymer14316056.41UniProt (A0A3Q7FTS1)
Pfam (PF01090)
In PDB
Solanum lycopersicum (tomato)
54VARibosomal_S10 domain-containing proteinpolymer12313735.11UniProt (A0A3Q7EMX2)
Pfam (PF00338)
In PDB
Solanum lycopersicum (tomato)
55WA40S ribosomal protein eS28polymer657551.81UniProt (K4B4Z0)
Pfam (PF01200)
In PDB
Solanum lycopersicum (tomato)
56XA40S ribosomal protein uS14polymer566455.61UniProt (A0A3Q7ITW7)
Pfam (PF00253)
In PDB
Solanum lycopersicum (tomato)
57YAMitogen-activated protein kinasepolymer32635993.61UniProt (A0A3Q7GX91)
Pfam (PF00400)
In PDB
Solanum lycopersicum (tomato)
58ZA40S ribosomal protein S25polymer10811995.21UniProt (A0A3Q7F3F2)
Pfam (PF03297)
In PDB
Solanum lycopersicum (tomato)
59aAtRNA_1polymer144470.71Solanum lycopersicum (tomato)
60bAmRNApolymer3895.61Solanum lycopersicum (tomato)
61t60S ribosomal protein L41polymer253445.41UniProt (K4C3A4)
Pfam (PF05162)
In PDB
Solanum lycopersicum (tomato)
62u40S ribosomal protein SApolymer29632216.31UniProt (A0A3Q7H1U4)
Pfam (PF00318)
In PDB
Solanum lycopersicum (tomato)
63v40S ribosomal protein S3apolymer26029741.51UniProt (A0A3Q7I881)
Pfam (PF01015)
In PDB
Solanum lycopersicum (tomato)
64w40S ribosomal protein S4polymer26429959.21UniProt (A0A3Q7GQU3)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Solanum lycopersicum (tomato)
65x40S ribosomal protein S7polymer19122088.51UniProt (A0A3Q7H0E8)
Pfam (PF01251)
In PDB
Solanum lycopersicum (tomato)
66y40S ribosomal protein S8polymer22024918.71UniProt (A0A3Q7HJ03)
Pfam (PF01201)
In PDB
Solanum lycopersicum (tomato)
67zRibosomal_S17_N domain-containing proteinpolymer15917740.81UniProt (K4C998)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Solanum lycopersicum (tomato)
68AA40S ribosomal protein S17polymer14416266.01UniProt (P49215)
Pfam (PF00833)
In PDB
Solanum lycopersicum (tomato)
69BA40S ribosomal protein S21polymer829163.21UniProt (A0A3Q7G7P4)
Pfam (PF01249)
In PDB
Solanum lycopersicum (tomato)
70CA40S body ribosomal protein uS12polymer14215771.61UniProt (K4D3L7)
Pfam (PF00164)
In PDB
Solanum lycopersicum (tomato)
71DA40S ribosomal protein S26polymer12714608.21UniProt (A0A3Q7GRY8)
Pfam (PF01283)
In PDB
Solanum lycopersicum (tomato)
72EAS5 DRBM domain-containing proteinpolymer28030630.71UniProt (A0A3Q7G7F0)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Solanum lycopersicum (tomato)
73FA40S ribosomal protein S6polymer24928384.21UniProt (A0A3Q7HSH1)
Pfam (PF01092)
In PDB
Solanum lycopersicum (tomato)
74GA40S body ribosomal protein uS4polymer19723051.71UniProt (K4ATQ2)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Solanum lycopersicum (tomato)
75HA30S ribosomal protein S15, chloroplasticpolymer15117099.31UniProt (K4CYU9)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Solanum lycopersicum (tomato)
76IARibosomal protein S14polymer15016389.91UniProt (Q38JI8)
Pfam (PF00411)
In PDB
Solanum lycopersicum (tomato)Ribosomal protein S14-like
77KA40S ribosomal protein S24polymer13315445.31UniProt (A0A3Q7I5D6)
Pfam (PF01282)
In PDB
Solanum lycopersicum (tomato)
78LA40S ribosomal protein S27polymer869620.21UniProt (A0A1U8DQX3)
In PDB
Solanum lycopersicum (tomato)
79MA40S ribosomal protein S30polymer626953.31UniProt (A0A0V0GRY5)
Pfam (PF04758)
In PDB
Solanum lycopersicum (tomato)
80JA40S ribosomal protein S15a-1polymer13014552.01UniProt (A0A1U7YEG5)
Pfam (PF00410)
In PDB
Solanum lycopersicum (tomato)40S ribosomal protein S15a-1 isoform X1
812, S2, D, 8, E...POTASSIUM IONnon-polymer39.1119Chemie (K)
822, 5, S2, FA, E...MAGNESIUM IONnon-polymer24.3364Chemie (MG)
83XA, DA, l, o, p...ZINC IONnon-polymer65.46Chemie (ZN)
842SPERMINEnon-polymer202.33Chemie (SPM)
852SPERMIDINEnon-polymer145.21Chemie (SPD)
86S21,4-DIAMINOBUTANEnon-polymer88.21Chemie (PUT)
87NAbeta-D-glucopyranosenon-polymer180.21Chemie (BGC)
88waterwater18.04728Chemie (HOH)
Sequence modifications
F: 1 - 406 (UniProt: A0A3Q7HW81)
PDBExternal DatabaseDetails
Val 162Ile 162conflict
Asn 170Val 170conflict
Gln 277Leu 277conflict
Ala 366Gln 366conflict
G: 1 - 301 (UniProt: A0A3Q7H274)
PDBExternal DatabaseDetails
Phe 51Leu 51conflict
His 85Arg 85conflict
J: 1 - 258 (UniProt: A0A3Q7GV73)
PDBExternal DatabaseDetails
Ser 10Ala 114variant
Ala 18Ser 122variant
Leu 21Val 125variant
K: 1 - 194 (UniProt: A0A3Q7JDZ0)
PDBExternal DatabaseDetails
Gln 24Leu 24conflict
Val 27Ile 27conflict
Gly 65Ser 65conflict
Thr 69Ala 69conflict
Ser 109Thr 109conflict
N: 1 - 206 (UniProt: A0A3Q7JCM5)
PDBExternal DatabaseDetails
Arg 128His 128conflict
P: 1 - 204 (UniProt: A0A3Q7HQH0)
PDBExternal DatabaseDetails
Val 135Ile 135conflict
Gln 137Ser 137conflict
Q: 1 - 206 (UniProt: A0A3Q7HGG4)
PDBExternal DatabaseDetails
Tyr 206Glu 206variant
R: 1 - 173 (UniProt: A0A3Q7FNQ5)
PDBExternal DatabaseDetails
Ser 46Arg 46conflict
S: 1 - 187 (UniProt: A0A3Q7I5W4)
PDBExternal DatabaseDetails
Thr 17Ile 17conflict
Ala 37Ser 37conflict
Pro 60Ala 60conflict
Ile 68Val 68conflict
Ala 71Met 71conflict
Gly 75Glu 75conflict
Val 79Ala 79conflict
Leu 81Val 81conflict
Cys 100Thr 100conflict
Lys 103Arg 103conflict
Leu 136Val 136conflict
Pro 153Lys 153conflict
T: 1 - 213 (UniProt: A0A3Q7GQ29)
PDBExternal DatabaseDetails
Lys 178Glu 178conflict
Lys 179Glu 179conflict
U: 1 - 178 (UniProt: A0A3Q7IGB1)
PDBExternal DatabaseDetails
Thr 73Lys 73conflict
Ala 104Gly 104conflict
Y: 1 - 164 (UniProt: A0A3Q7IN69)
PDBExternal DatabaseDetails
Met 0-initiating methionine
Z: 1 - 154 (UniProt: A0A3Q7INK3)
PDBExternal DatabaseDetails
Ser 55Asn 55conflict
Val 61Ile 61conflict
Ala 73Gln 73conflict
Ile 74Val 74conflict
Tyr 77Cys 77conflict
Lys 101His 101conflict
a: 1 - 146 (UniProt: A0A3Q7FBC6)
PDBExternal DatabaseDetails
Val 25Leu 25conflict
Asn 43Ser 43conflict
Asn 99His 99conflict
Val 105Ile 105conflict
b: 1 - 135 (UniProt: A0A3Q7GZ83)
PDBExternal DatabaseDetails
Phe 117Leu 117conflict
c: 1 - 148 (UniProt: A0A3Q7GZ10)
PDBExternal DatabaseDetails
Val 82Leu 82conflict
Ile 129Val 129conflict
f: 1 - 120 (UniProt: A0A3Q7JRW8)
PDBExternal DatabaseDetails
Val 76Ile 76conflict
j: 1 - 123 (UniProt: Q53U38)
PDBExternal DatabaseDetails
Ala 67Leu 67conflict
Val 72Ala 72conflict
Ser 100Ala 100conflict
Met 112Leu 112conflict
k: 1 - 110 (UniProt: A0A3Q7GUG2)
PDBExternal DatabaseDetails
Lys 88Arg 124conflict
l: 1 - 95 (UniProt: A0A3Q7FV98)
PDBExternal DatabaseDetails
Leu 44Lys 44conflict
o: 1 - 128 (UniProt: K4B017)
PDBExternal DatabaseDetails
Arg 113Lys 113conflict
OA: 5 - 215 (UniProt: A0A3Q7IVL4)
PDBExternal DatabaseDetails
Gly 37Asp 33conflict
Met 43Ile 39conflict
Met 60Thr 56conflict
Gln 117Leu 113conflict
QA: 1 - 151 (UniProt: A0A3Q7F5X2)
PDBExternal DatabaseDetails
Gln 75Pro 75conflict
RA: 1 - 147 (UniProt: A0A3Q7GDB0)
PDBExternal DatabaseDetails
His 62Gln 62conflict
Gln 105Thr 105conflict
TA: 1 - 152 (UniProt: A0A3Q7FJL7)
PDBExternal DatabaseDetails
Leu 67Val 67conflict
UA: 1 - 143 (UniProt: A0A3Q7FTS1)
PDBExternal DatabaseDetails
Ser 6Asn 6conflict
Asp 14Glu 14conflict
XA: 1 - 56 (UniProt: A0A3Q7ITW7)
PDBExternal DatabaseDetails
Asn 13Tyr 13conflict
v: 1 - 260 (UniProt: A0A3Q7I881)
PDBExternal DatabaseDetails
Glu 39Gly 39conflict
Ala 141Gly 141conflict
Val 169Arg 169conflict
Arg 173Val 173conflict
Val 185Ala 185conflict
Phe 205Tyr 205conflict
w: 1 - 264 (UniProt: A0A3Q7GQU3)
PDBExternal DatabaseDetails
Leu 48Met 48conflict
Thr 91Ser 91conflict
Ser 98Asn 98conflict
Leu 114Val 114conflict
Ala 119Ser 119conflict
Asp 165Glu 165conflict
Ile 194Val 194conflict
Leu 195Ile 195conflict
Val 208Leu 208conflict
Ser 232Thr 232conflict
Ser 247Thr 247conflict
Met 256Leu 256conflict
x: 1 - 191 (UniProt: A0A3Q7H0E8)
PDBExternal DatabaseDetails
Ala 13Asp 13conflict
His 19Phe 19conflict
Ser 22Thr 22conflict
Gly 24Ala 24conflict
y: 1 - 222 (UniProt: A0A3Q7HJ03)
PDBExternal DatabaseDetails
Lys 18Gln 18conflict
Ser 20Thr 20conflict
Phe 66Tyr 66conflict
Asn 159Lys 157conflict
Ala 162Lys 160conflict
Lys 165Thr 163conflict
Ala 175Ser 173conflict
Leu 180Tyr 178conflict
AA: 1 - 144 (UniProt: P49215)
PDBExternal DatabaseDetails
Glu 87Asp 87conflict
BA: 1 - 82 (UniProt: A0A3Q7G7P4)
PDBExternal DatabaseDetails
Val 44Arg 44conflict
Met 68Leu 68conflict
IA: 1 - 150 (UniProt: Q38JI8)
PDBExternal DatabaseDetails
Ias 137Asp 137conflict
LA: 1 - 86 (UniProt: A0A1U8DQX3)
PDBExternal DatabaseDetails
Lys 19Arg 19conflict
Ile 76Thr 76conflict
JA: 1 - 130 (UniProt: A0A1U7YEG5)
PDBExternal DatabaseDetails
Ala 20Arg 20conflict
Ala 23Arg 23conflict
Glu 26Met 26conflict
Leu 27Ile 27conflict
Asp 49Glu 49conflict
Gln 51Glu 51conflict
Val 58Ser 58conflict
Ala 84Lys 84conflict
Thr 85Glu 85conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains80
Total formula weight3162349.3
Non-Polymers*Number of molecules495
Total formula weight14912.7
All*Total formula weight3177262.0
*Water molecules are not included.

222415

PDB entries from 2024-07-10

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