7QEP
Cryo-EM structure of the ribosome from Encephalitozoon cuniculi
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | RA | Guanine nucleotide binding protein beta subunit | polymer | 334 | 36828.8 | 1 | UniProt (M1K775) Pfam (PF00400) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 2 | 1 | 5.8S-23S ribosomal RNA | polymer | 2486 | 807085.0 | 1 | GenBank (13560063) | Encephalitozoon cuniculi GB-M1 | |
| 3 | 2 | 5S ribosomal RNA | polymer | 119 | 38478.9 | 1 | GenBank (13560072) | Encephalitozoon cuniculi GB-M1 | |
| 4 | 3 | 18S ribosomal RNA | polymer | 1300 | 422123.4 | 1 | GenBank (13560063) | Encephalitozoon cuniculi GB-M1 | |
| 5 | C0 | 40S RIBOSOMAL PROTEIN S10 | polymer | 96 | 11167.1 | 1 | UniProt (Q8SS17) Pfam (PF03501) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 6 | C1 | 40S RIBOSOMAL PROTEIN S11 | polymer | 156 | 17788.9 | 1 | UniProt (Q8SS53) Pfam (PF16205) Pfam (PF00366) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 7 | C2 | 40S RIBOSOMAL PROTEIN S12 | polymer | 134 | 14518.1 | 1 | UniProt (Q8SSK9) Pfam (PF01248) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 8 | C3 | 40S ribosomal protein S13 | polymer | 148 | 16858.6 | 1 | UniProt (Q8SRB3) Pfam (PF08069) Pfam (PF00312) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 9 | C4 | 40S ribosomal protein S14 | polymer | 134 | 14423.9 | 1 | UniProt (Q8SSA6) Pfam (PF00411) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 10 | C5 | RIBOSOMAL PROTEIN S15 | polymer | 148 | 16383.3 | 1 | UniProt (Q8SRE7) Pfam (PF00203) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 11 | C6 | 40S RIBOSOMAL PROTEIN S16 | polymer | 145 | 16602.6 | 1 | UniProt (Q8SSC2) Pfam (PF00380) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 12 | C7 | 40S ribosomal protein S17 | polymer | 120 | 14057.3 | 1 | UniProt (Q8SSF9) Pfam (PF00833) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 13 | C8 | 40S ribosomal protein S18 | polymer | 153 | 17431.3 | 1 | UniProt (Q8SRP2) Pfam (PF00416) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 14 | C9 | 40S ribosomal protein S19 | polymer | 137 | 15806.2 | 1 | UniProt (Q8SQS8) Pfam (PF01090) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 15 | D0 | 40S RIBOSOMAL PROTEIN S20 | polymer | 120 | 14236.5 | 1 | UniProt (Q8SQX6) Pfam (PF00338) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 16 | D1 | ECU11_0225 protein | polymer | 70 | 7661.8 | 1 | UniProt (I7L8M6) Pfam (PF01249) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 17 | D2 | 40S RIBOSOMAL PROTEIN S15A (S22 in yeast) | polymer | 128 | 14582.0 | 1 | UniProt (Q8SQL9) Pfam (PF00410) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 18 | D3 | 40S ribosomal protein S23 | polymer | 140 | 15345.0 | 1 | UniProt (Q8SR65) Pfam (PF00164) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 19 | D4 | 40S RIBOSOMAL PROTEIN S24 | polymer | 131 | 15529.3 | 1 | UniProt (Q8SR06) Pfam (PF01282) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 20 | D5 | 40S ribosomal protein S25 | polymer | 109 | 12355.4 | 1 | UniProt (Q8STD9) Pfam (PF03297) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 21 | D6 | 40S ribosomal protein S26 | polymer | 105 | 11902.8 | 1 | UniProt (Q8SRN2) Pfam (PF01283) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 22 | D7 | 40S RIBOSOMAL PROTEIN S27 | polymer | 85 | 9434.8 | 1 | UniProt (Q8SS34) Pfam (PF01667) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 23 | D8 | 40S RIBOSOMAL PROTEIN S28 | polymer | 65 | 7459.6 | 1 | UniProt (Q8SQM2) Pfam (PF01200) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 24 | D9 | 40S ribosomal protein S29 | polymer | 66 | 7638.0 | 1 | Encephalitozoon cuniculi GB-M1 | ||
| 25 | E1 | Similarity to monoubiquitin/carboxy-extension protein fusion | polymer | 152 | 17141.9 | 1 | UniProt (Q8SWB3) Pfam (PF00240) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 26 | L1 | 60S ribosomal protein L1 | polymer | 219 | 24752.6 | 1 | UniProt (Q8SRY5) Pfam (PF00687) In PDB | Encephalitozoon cuniculi GB-M1 | L10a |
| 27 | L2 | 60S ribosomal protein L8 | polymer | 239 | 25911.1 | 1 | UniProt (Q8SSM6) Pfam (PF03947) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 28 | L3 | 60S ribosomal protein L3 | polymer | 383 | 42555.7 | 1 | UniProt (Q8SQI3) Pfam (PF00297) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 29 | L4 | 60S RIBOSOMAL PROTEIN L4 | polymer | 335 | 37767.6 | 1 | UniProt (Q8SRC2) Pfam (PF00573) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 30 | L5 | 60S RIBOSOMAL PROTEIN L5 | polymer | 287 | 32770.3 | 1 | UniProt (Q8SRQ3) Pfam (PF17144) Pfam (PF14204) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 31 | L6 | 60S RIBOSOMAL PROTEIN L6 | polymer | 171 | 19672.8 | 1 | UniProt (Q8SR91) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 32 | L7 | 60S ribosomal protein L7 | polymer | 239 | 27987.6 | 1 | UniProt (Q8SS93) Pfam (PF00327) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 33 | L8 | 60S ribosomal protein L7a | polymer | 206 | 23587.9 | 1 | UniProt (Q8SSG1) Pfam (PF01248) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 34 | L9 | 60S RIBOSOMAL PROTEIN L9 | polymer | 183 | 20649.1 | 1 | UniProt (Q8SSF7) Pfam (PF00347) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 35 | M0 | 60S ribosomal protein L10 | polymer | 219 | 25047.1 | 1 | UniProt (Q8SR96) Pfam (PF00252) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 36 | M1 | 60S ribosomal protein L11 | polymer | 173 | 19733.0 | 1 | UniProt (Q8SSG9) Pfam (PF00281) Pfam (PF00673) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 37 | M3 | 60S RIBOSOMAL PROTEIN L13 | polymer | 163 | 18900.1 | 1 | UniProt (Q8SSC1) Pfam (PF01294) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 38 | M4 | ECU06_1215 protein | polymer | 106 | 12275.2 | 1 | UniProt (I7L8J2) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 39 | M5 | Ribosomal protein L15 | polymer | 204 | 23823.9 | 1 | UniProt (Q8SQU2) Pfam (PF00827) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 40 | M6 | 60S RIBOSOMAL PROTEIN L13A (L16) | polymer | 198 | 22724.8 | 1 | UniProt (Q8SS16) Pfam (PF00572) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 41 | M7 | 60S RIBOSOMAL PROTEIN L17 | polymer | 183 | 20885.4 | 1 | UniProt (Q8SRH7) Pfam (PF00237) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 42 | M8 | 60S RIBOSOMAL PROTEIN L18 | polymer | 200 | 22655.6 | 1 | UniProt (Q8SS76) Pfam (PF17135) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 43 | M9 | 60S RIBOSOMAL PROTEIN L19 | polymer | 171 | 20198.9 | 1 | UniProt (Q8SRP5) Pfam (PF01280) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 44 | MD | Uncharacterized protein ECU01_0250 | polymer | 171 | 19453.3 | 1 | UniProt (Q8SWQ4) Pfam (PF05907) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 45 | MS | ECU06_1135 protein | polymer | 73 | 9019.9 | 1 | UniProt (I7IV41) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 46 | N0 | 60S ribosomal protein L20 | polymer | 188 | 21592.2 | 1 | UniProt (Q8SRD7) Pfam (PF01775) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 47 | N1 | 60S ribosomal protein L21 | polymer | 160 | 18621.9 | 1 | UniProt (Q8SRW8) Pfam (PF01157) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 48 | N2 | 60S ribosomal protein L22 | polymer | 112 | 12598.6 | 1 | UniProt (Q8SS49) Pfam (PF01776) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 49 | N3 | 60S ribosomal protein L23 | polymer | 146 | 16383.5 | 1 | UniProt (Q8SRA7) Pfam (PF00238) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 50 | N4 | Similarity to 60S RIBOSOMAL PROTEIN L24 | polymer | 100 | 11350.2 | 1 | UniProt (Q8SUZ9) Pfam (PF01246) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 51 | N5 | 60S RIBOSOMAL PROTEIN L23A | polymer | 105 | 11839.9 | 1 | UniProt (Q8SR87) Pfam (PF00276) In PDB | Encephalitozoon cuniculi GB-M1 | 60S RIBOSOMAL PROTEIN L23A (L25 in yeast) |
| 52 | N6 | 60S RIBOSOMAL PROTEIN L26 | polymer | 143 | 16811.5 | 1 | UniProt (Q8SRE6) Pfam (PF16906) Pfam (PF00467) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 53 | N7 | 60S RIBOSOMAL PROTEIN L27 | polymer | 126 | 14508.2 | 1 | UniProt (Q8SS64) Pfam (PF01777) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 54 | N8 | 60S ribosomal protein L27a | polymer | 147 | 17066.8 | 1 | UniProt (O62581) Pfam (PF00828) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 55 | N9 | 60S ribosomal protein L29 | polymer | 57 | 6565.6 | 1 | UniProt (I7JTZ6) Pfam (PF01779) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 56 | O0 | 60S RIBOSOMAL PROTEIN L30 | polymer | 108 | 11785.8 | 1 | UniProt (Q8SRU1) Pfam (PF01248) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 57 | O1 | 60S ribosomal protein L31 | polymer | 111 | 13035.3 | 1 | UniProt (Q8SSC8) Pfam (PF01198) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 58 | O2 | 60S ribosomal protein L32 | polymer | 139 | 16376.4 | 1 | UniProt (Q8SS18) Pfam (PF01655) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 59 | O3 | 60S RIBOSOMAL PROTEIN L35A (L33) | polymer | 113 | 12832.8 | 1 | UniProt (Q8SSF3) Pfam (PF01247) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 60 | O4 | 60S ribosomal protein L34 | polymer | 110 | 12463.7 | 1 | UniProt (Q8SSA2) Pfam (PF01199) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 61 | O5 | 60S ribosomal protein L35-1 | polymer | 122 | 14128.7 | 1 | UniProt (Q8ST62) Pfam (PF00831) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 62 | O6 | 60S ribosomal protein L36 | polymer | 94 | 10776.9 | 1 | UniProt (Q8SRP1) Pfam (PF01158) In PDB | Encephalitozoon cuniculi GB-M1 | L39 |
| 63 | O7 | 60S ribosomal protein L37 | polymer | 90 | 10416.3 | 1 | UniProt (Q8SRH5) Pfam (PF01907) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 64 | O9 | 60S ribosomal protein L39 | polymer | 52 | 6517.9 | 1 | UniProt (Q8SQP8) Pfam (PF00832) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 65 | P0 | UBIQUITIN/ L40 RIBOSOMAL PROTEIN FUSION | polymer | 131 | 14313.0 | 1 | UniProt (Q8SRH8) Pfam (PF00240) Pfam (PF01020) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 66 | P2 | 60S ribosomal protein L44 | polymer | 104 | 12035.4 | 1 | UniProt (Q8SR18) Pfam (PF00935) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 67 | P3 | 60S RIBOSOMAL PROTEIN L37A (L43) | polymer | 89 | 9849.8 | 1 | UniProt (Q8SRJ2) Pfam (PF01780) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 68 | S0 | 40S ribosomal protein S0 | polymer | 252 | 27899.9 | 1 | UniProt (Q8SS60) Pfam (PF00318) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 69 | S1 | 40S ribosomal protein S1 | polymer | 239 | 26985.3 | 1 | UniProt (Q8SS05) Pfam (PF01015) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 70 | S2 | 40S RIBOSOMAL PROTEIN S2 | polymer | 242 | 26270.6 | 1 | UniProt (Q8SRG6) Pfam (PF00333) Pfam (PF03719) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 71 | S3 | 40S ribosomal protein S3 | polymer | 216 | 24318.4 | 1 | UniProt (Q8SQM3) Pfam (PF00189) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 72 | S4 | 40S ribosomal protein S4 | polymer | 268 | 30090.7 | 1 | UniProt (Q8SRB9) Pfam (PF08071) Pfam (PF00900) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 73 | S5 | 40S ribosomal protein S5 | polymer | 189 | 20987.2 | 1 | UniProt (Q8SS72) Pfam (PF00177) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 74 | S6 | 40S ribosomal protein S6 | polymer | 217 | 25518.7 | 1 | UniProt (Q8SRY0) Pfam (PF01092) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 75 | S7 | 40S ribosomal protein S7 | polymer | 170 | 19032.1 | 1 | UniProt (Q8SQX3) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 76 | S8 | 40S ribosomal protein S8 | polymer | 173 | 19615.8 | 1 | UniProt (Q8SWC9) Pfam (PF01201) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 77 | S9 | 40S ribosomal protein S9 | polymer | 184 | 20954.5 | 1 | UniProt (Q8SRW6) In PDB | Encephalitozoon cuniculi GB-M1 | |
| 78 | D7, D9, E1, O7, P0... | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
| 79 | L9 | ADENOSINE MONOPHOSPHATE | non-polymer | 347.2 | 1 | Chemie (AMP) | |||
| 80 | N8 | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) |
Sequence modifications
1: 1 - 2629 (GenBank: 13560063)
MD: 1 - 171 (UniProt: Q8SWQ4)
| PDB | External Database | Details |
|---|---|---|
| - | G 2886 | deletion |
| PDB | External Database | Details |
|---|---|---|
| Gly 59 | Ser 59 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 77 |
| Total formula weight | 2596755.9 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 1015.7 | |
| All* | Total formula weight | 2597771.6 |
