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7QEP

Cryo-EM structure of the ribosome from Encephalitozoon cuniculi

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
C00005840cellular_componentribosome
C10003735molecular_functionstructural constituent of ribosome
C10005840cellular_componentribosome
C10006412biological_processtranslation
C10022627cellular_componentcytosolic small ribosomal subunit
C11990904cellular_componentribonucleoprotein complex
C20005840cellular_componentribosome
C21990904cellular_componentribonucleoprotein complex
C30003735molecular_functionstructural constituent of ribosome
C30005840cellular_componentribosome
C30006412biological_processtranslation
C30022627cellular_componentcytosolic small ribosomal subunit
C30070181molecular_functionsmall ribosomal subunit rRNA binding
C31990904cellular_componentribonucleoprotein complex
C40000028biological_processribosomal small subunit assembly
C40003735molecular_functionstructural constituent of ribosome
C40005737cellular_componentcytoplasm
C40005840cellular_componentribosome
C40006412biological_processtranslation
C40022627cellular_componentcytosolic small ribosomal subunit
C41990904cellular_componentribonucleoprotein complex
C50000028biological_processribosomal small subunit assembly
C50003735molecular_functionstructural constituent of ribosome
C50005840cellular_componentribosome
C50006412biological_processtranslation
C50015935cellular_componentsmall ribosomal subunit
C50022627cellular_componentcytosolic small ribosomal subunit
C51990904cellular_componentribonucleoprotein complex
C60000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
C60003723molecular_functionRNA binding
C60003735molecular_functionstructural constituent of ribosome
C60005840cellular_componentribosome
C60006412biological_processtranslation
C60022627cellular_componentcytosolic small ribosomal subunit
C61990904cellular_componentribonucleoprotein complex
C70003735molecular_functionstructural constituent of ribosome
C70005737cellular_componentcytoplasm
C70005840cellular_componentribosome
C70006412biological_processtranslation
C71990904cellular_componentribonucleoprotein complex
C80003676molecular_functionnucleic acid binding
C80003723molecular_functionRNA binding
C80003735molecular_functionstructural constituent of ribosome
C80005737cellular_componentcytoplasm
C80005829cellular_componentcytosol
C80005840cellular_componentribosome
C80006412biological_processtranslation
C80015935cellular_componentsmall ribosomal subunit
C80019843molecular_functionrRNA binding
C81990904cellular_componentribonucleoprotein complex
C90000028biological_processribosomal small subunit assembly
C90003723molecular_functionRNA binding
C90003735molecular_functionstructural constituent of ribosome
C90005737cellular_componentcytoplasm
C90005840cellular_componentribosome
C90006412biological_processtranslation
C90022627cellular_componentcytosolic small ribosomal subunit
C91990904cellular_componentribonucleoprotein complex
D00005840cellular_componentribosome
D01990904cellular_componentribonucleoprotein complex
D10003735molecular_functionstructural constituent of ribosome
D10005840cellular_componentribosome
D10006412biological_processtranslation
D20003735molecular_functionstructural constituent of ribosome
D20005840cellular_componentribosome
D20006412biological_processtranslation
D20022627cellular_componentcytosolic small ribosomal subunit
D21990904cellular_componentribonucleoprotein complex
D30003735molecular_functionstructural constituent of ribosome
D30005840cellular_componentribosome
D30006412biological_processtranslation
D30015935cellular_componentsmall ribosomal subunit
D30022627cellular_componentcytosolic small ribosomal subunit
D31990904cellular_componentribonucleoprotein complex
D40003735molecular_functionstructural constituent of ribosome
D40005840cellular_componentribosome
D40006412biological_processtranslation
D41990904cellular_componentribonucleoprotein complex
D50003735molecular_functionstructural constituent of ribosome
D50005840cellular_componentribosome
D50022627cellular_componentcytosolic small ribosomal subunit
D51990904cellular_componentribonucleoprotein complex
D60003729molecular_functionmRNA binding
D60003735molecular_functionstructural constituent of ribosome
D60005737cellular_componentcytoplasm
D60005840cellular_componentribosome
D60006412biological_processtranslation
D60022627cellular_componentcytosolic small ribosomal subunit
D61990904cellular_componentribonucleoprotein complex
D70000028biological_processribosomal small subunit assembly
D70003723molecular_functionRNA binding
D70003735molecular_functionstructural constituent of ribosome
D70005840cellular_componentribosome
D70006412biological_processtranslation
D70022627cellular_componentcytosolic small ribosomal subunit
D80000028biological_processribosomal small subunit assembly
D80003735molecular_functionstructural constituent of ribosome
D80005840cellular_componentribosome
D80006412biological_processtranslation
D80022627cellular_componentcytosolic small ribosomal subunit
D80030490biological_processmaturation of SSU-rRNA
D90003735molecular_functionstructural constituent of ribosome
D90005840cellular_componentribosome
D90006412biological_processtranslation
D90008270molecular_functionzinc ion binding
E10005634cellular_componentnucleus
E10005737cellular_componentcytoplasm
E10006412biological_processtranslation
E10016567biological_processprotein ubiquitination
E10019941biological_processmodification-dependent protein catabolic process
E10031386molecular_functionprotein tag activity
E10031625molecular_functionubiquitin protein ligase binding
L10003723molecular_functionRNA binding
L10003735molecular_functionstructural constituent of ribosome
L10005737cellular_componentcytoplasm
L10005840cellular_componentribosome
L10006412biological_processtranslation
L10015934cellular_componentlarge ribosomal subunit
L11990904cellular_componentribonucleoprotein complex
L20002181biological_processcytoplasmic translation
L20003723molecular_functionRNA binding
L20003735molecular_functionstructural constituent of ribosome
L20005737cellular_componentcytoplasm
L20005840cellular_componentribosome
L20006412biological_processtranslation
L20019843molecular_functionrRNA binding
L20022625cellular_componentcytosolic large ribosomal subunit
L20022626cellular_componentcytosolic ribosome
L21990904cellular_componentribonucleoprotein complex
L30003723molecular_functionRNA binding
L30003735molecular_functionstructural constituent of ribosome
L30005737cellular_componentcytoplasm
L30005840cellular_componentribosome
L30006412biological_processtranslation
L30022625cellular_componentcytosolic large ribosomal subunit
L31990904cellular_componentribonucleoprotein complex
L40003723molecular_functionRNA binding
L40003735molecular_functionstructural constituent of ribosome
L40005840cellular_componentribosome
L40006412biological_processtranslation
L40022625cellular_componentcytosolic large ribosomal subunit
L41990904cellular_componentribonucleoprotein complex
L50000027biological_processribosomal large subunit assembly
L50003735molecular_functionstructural constituent of ribosome
L50005737cellular_componentcytoplasm
L50005840cellular_componentribosome
L50006412biological_processtranslation
L50008097molecular_function5S rRNA binding
L50022625cellular_componentcytosolic large ribosomal subunit
L51990904cellular_componentribonucleoprotein complex
L60000027biological_processribosomal large subunit assembly
L60002181biological_processcytoplasmic translation
L60003723molecular_functionRNA binding
L60003735molecular_functionstructural constituent of ribosome
L60005840cellular_componentribosome
L60006412biological_processtranslation
L60022625cellular_componentcytosolic large ribosomal subunit
L61990904cellular_componentribonucleoprotein complex
L70000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
L70003723molecular_functionRNA binding
L70003735molecular_functionstructural constituent of ribosome
L70005840cellular_componentribosome
L70022625cellular_componentcytosolic large ribosomal subunit
L71990904cellular_componentribonucleoprotein complex
L80000470biological_processmaturation of LSU-rRNA
L80003723molecular_functionRNA binding
L80005737cellular_componentcytoplasm
L80005840cellular_componentribosome
L80022625cellular_componentcytosolic large ribosomal subunit
L81990904cellular_componentribonucleoprotein complex
L90002181biological_processcytoplasmic translation
L90003735molecular_functionstructural constituent of ribosome
L90005840cellular_componentribosome
L90006412biological_processtranslation
L90019843molecular_functionrRNA binding
L90022625cellular_componentcytosolic large ribosomal subunit
L91990904cellular_componentribonucleoprotein complex
M00000027biological_processribosomal large subunit assembly
M00003735molecular_functionstructural constituent of ribosome
M00005840cellular_componentribosome
M00006412biological_processtranslation
M00022625cellular_componentcytosolic large ribosomal subunit
M01990904cellular_componentribonucleoprotein complex
M10003723molecular_functionRNA binding
M10003735molecular_functionstructural constituent of ribosome
M10005634cellular_componentnucleus
M10005737cellular_componentcytoplasm
M10005840cellular_componentribosome
M10006412biological_processtranslation
M10019843molecular_functionrRNA binding
M10022625cellular_componentcytosolic large ribosomal subunit
M11990904cellular_componentribonucleoprotein complex
M30003723molecular_functionRNA binding
M30003735molecular_functionstructural constituent of ribosome
M30005840cellular_componentribosome
M30006412biological_processtranslation
M30022625cellular_componentcytosolic large ribosomal subunit
M31990904cellular_componentribonucleoprotein complex
M50002181biological_processcytoplasmic translation
M50003723molecular_functionRNA binding
M50003735molecular_functionstructural constituent of ribosome
M50005840cellular_componentribosome
M50006412biological_processtranslation
M50022625cellular_componentcytosolic large ribosomal subunit
M50022626cellular_componentcytosolic ribosome
M51990904cellular_componentribonucleoprotein complex
M60003729molecular_functionmRNA binding
M60003735molecular_functionstructural constituent of ribosome
M60005840cellular_componentribosome
M60006412biological_processtranslation
M60015934cellular_componentlarge ribosomal subunit
M60017148biological_processnegative regulation of translation
M60022625cellular_componentcytosolic large ribosomal subunit
M61990904cellular_componentribonucleoprotein complex
M70002181biological_processcytoplasmic translation
M70003735molecular_functionstructural constituent of ribosome
M70005840cellular_componentribosome
M70006412biological_processtranslation
M70015934cellular_componentlarge ribosomal subunit
M70022625cellular_componentcytosolic large ribosomal subunit
M71990904cellular_componentribonucleoprotein complex
M80003723molecular_functionRNA binding
M80003735molecular_functionstructural constituent of ribosome
M80005840cellular_componentribosome
M80006412biological_processtranslation
M80022625cellular_componentcytosolic large ribosomal subunit
M81990904cellular_componentribonucleoprotein complex
M90003723molecular_functionRNA binding
M90003735molecular_functionstructural constituent of ribosome
M90005840cellular_componentribosome
M90006412biological_processtranslation
M90022625cellular_componentcytosolic large ribosomal subunit
M91990904cellular_componentribonucleoprotein complex
N00003735molecular_functionstructural constituent of ribosome
N00005840cellular_componentribosome
N00006412biological_processtranslation
N00022625cellular_componentcytosolic large ribosomal subunit
N01990904cellular_componentribonucleoprotein complex
N10003735molecular_functionstructural constituent of ribosome
N10005840cellular_componentribosome
N10006412biological_processtranslation
N10022625cellular_componentcytosolic large ribosomal subunit
N11990904cellular_componentribonucleoprotein complex
N20002181biological_processcytoplasmic translation
N20003723molecular_functionRNA binding
N20003735molecular_functionstructural constituent of ribosome
N20005737cellular_componentcytoplasm
N20005840cellular_componentribosome
N20006412biological_processtranslation
N21990904cellular_componentribonucleoprotein complex
N30003735molecular_functionstructural constituent of ribosome
N30005840cellular_componentribosome
N30006412biological_processtranslation
N30022625cellular_componentcytosolic large ribosomal subunit
N30070180molecular_functionlarge ribosomal subunit rRNA binding
N31990904cellular_componentribonucleoprotein complex
N40005840cellular_componentribosome
N50000027biological_processribosomal large subunit assembly
N50003735molecular_functionstructural constituent of ribosome
N50005840cellular_componentribosome
N50006412biological_processtranslation
N50019843molecular_functionrRNA binding
N50022625cellular_componentcytosolic large ribosomal subunit
N51990904cellular_componentribonucleoprotein complex
N60002181biological_processcytoplasmic translation
N60003723molecular_functionRNA binding
N60003735molecular_functionstructural constituent of ribosome
N60005840cellular_componentribosome
N60006412biological_processtranslation
N60015934cellular_componentlarge ribosomal subunit
N60022625cellular_componentcytosolic large ribosomal subunit
N60042273biological_processribosomal large subunit biogenesis
N70003735molecular_functionstructural constituent of ribosome
N70005840cellular_componentribosome
N70006412biological_processtranslation
N70022625cellular_componentcytosolic large ribosomal subunit
N71990904cellular_componentribonucleoprotein complex
N80003735molecular_functionstructural constituent of ribosome
N80005737cellular_componentcytoplasm
N80005840cellular_componentribosome
N80006412biological_processtranslation
N80015934cellular_componentlarge ribosomal subunit
N80022625cellular_componentcytosolic large ribosomal subunit
N80043232cellular_componentintracellular non-membrane-bounded organelle
N81990904cellular_componentribonucleoprotein complex
N90002181biological_processcytoplasmic translation
N90003735molecular_functionstructural constituent of ribosome
N90005840cellular_componentribosome
N90006412biological_processtranslation
N90022625cellular_componentcytosolic large ribosomal subunit
N91990904cellular_componentribonucleoprotein complex
O00003723molecular_functionRNA binding
O00003735molecular_functionstructural constituent of ribosome
O00005840cellular_componentribosome
O00022625cellular_componentcytosolic large ribosomal subunit
O10003735molecular_functionstructural constituent of ribosome
O10005840cellular_componentribosome
O10006412biological_processtranslation
O11990904cellular_componentribonucleoprotein complex
O20003735molecular_functionstructural constituent of ribosome
O20005840cellular_componentribosome
O20006412biological_processtranslation
O20022625cellular_componentcytosolic large ribosomal subunit
O21990904cellular_componentribonucleoprotein complex
O30002181biological_processcytoplasmic translation
O30003735molecular_functionstructural constituent of ribosome
O30005840cellular_componentribosome
O30006412biological_processtranslation
O30022625cellular_componentcytosolic large ribosomal subunit
O30042273biological_processribosomal large subunit biogenesis
O40003735molecular_functionstructural constituent of ribosome
O40005840cellular_componentribosome
O40006412biological_processtranslation
O41990904cellular_componentribonucleoprotein complex
O50000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
O50003729molecular_functionmRNA binding
O50003735molecular_functionstructural constituent of ribosome
O50005737cellular_componentcytoplasm
O50005840cellular_componentribosome
O50006412biological_processtranslation
O50022625cellular_componentcytosolic large ribosomal subunit
O51990904cellular_componentribonucleoprotein complex
O60003735molecular_functionstructural constituent of ribosome
O60005737cellular_componentcytoplasm
O60005840cellular_componentribosome
O60006412biological_processtranslation
O61990904cellular_componentribonucleoprotein complex
O70003723molecular_functionRNA binding
O70003735molecular_functionstructural constituent of ribosome
O70005840cellular_componentribosome
O70006412biological_processtranslation
O70019843molecular_functionrRNA binding
O70022625cellular_componentcytosolic large ribosomal subunit
O70046872molecular_functionmetal ion binding
O71990904cellular_componentribonucleoprotein complex
O90003735molecular_functionstructural constituent of ribosome
O90005840cellular_componentribosome
O90006412biological_processtranslation
O91990904cellular_componentribonucleoprotein complex
P00003735molecular_functionstructural constituent of ribosome
P00005840cellular_componentribosome
P00006412biological_processtranslation
P01990904cellular_componentribonucleoprotein complex
P20003735molecular_functionstructural constituent of ribosome
P20005840cellular_componentribosome
P20006412biological_processtranslation
P20022625cellular_componentcytosolic large ribosomal subunit
P21990904cellular_componentribonucleoprotein complex
P30003735molecular_functionstructural constituent of ribosome
P30005840cellular_componentribosome
P30006412biological_processtranslation
P31990904cellular_componentribonucleoprotein complex
RA0005669cellular_componenttranscription factor TFIID complex
RA0006367biological_processtranscription initiation at RNA polymerase II promoter
RA0016251molecular_functionRNA polymerase II general transcription initiation factor activity
S00000028biological_processribosomal small subunit assembly
S00003735molecular_functionstructural constituent of ribosome
S00005737cellular_componentcytoplasm
S00005840cellular_componentribosome
S00006412biological_processtranslation
S00015935cellular_componentsmall ribosomal subunit
S00022627cellular_componentcytosolic small ribosomal subunit
S00030686cellular_component90S preribosome
S01990904cellular_componentribonucleoprotein complex
S10003735molecular_functionstructural constituent of ribosome
S10005737cellular_componentcytoplasm
S10005829cellular_componentcytosol
S10005840cellular_componentribosome
S10006412biological_processtranslation
S10022627cellular_componentcytosolic small ribosomal subunit
S11990904cellular_componentribonucleoprotein complex
S20003723molecular_functionRNA binding
S20003735molecular_functionstructural constituent of ribosome
S20005840cellular_componentribosome
S20006412biological_processtranslation
S20015935cellular_componentsmall ribosomal subunit
S20022627cellular_componentcytosolic small ribosomal subunit
S21990904cellular_componentribonucleoprotein complex
S30003723molecular_functionRNA binding
S30003735molecular_functionstructural constituent of ribosome
S30005634cellular_componentnucleus
S30005840cellular_componentribosome
S30006412biological_processtranslation
S30015935cellular_componentsmall ribosomal subunit
S30022626cellular_componentcytosolic ribosome
S30022627cellular_componentcytosolic small ribosomal subunit
S31990904cellular_componentribonucleoprotein complex
S40003723molecular_functionRNA binding
S40003735molecular_functionstructural constituent of ribosome
S40005737cellular_componentcytoplasm
S40005840cellular_componentribosome
S40006412biological_processtranslation
S40019843molecular_functionrRNA binding
S40022627cellular_componentcytosolic small ribosomal subunit
S41990904cellular_componentribonucleoprotein complex
S50000028biological_processribosomal small subunit assembly
S50003729molecular_functionmRNA binding
S50003735molecular_functionstructural constituent of ribosome
S50005737cellular_componentcytoplasm
S50005840cellular_componentribosome
S50006412biological_processtranslation
S50015935cellular_componentsmall ribosomal subunit
S50019843molecular_functionrRNA binding
S50022627cellular_componentcytosolic small ribosomal subunit
S51990904cellular_componentribonucleoprotein complex
S60003735molecular_functionstructural constituent of ribosome
S60005840cellular_componentribosome
S60006412biological_processtranslation
S61990904cellular_componentribonucleoprotein complex
S70005737cellular_componentcytoplasm
S70005840cellular_componentribosome
S71990904cellular_componentribonucleoprotein complex
S80000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
S80003735molecular_functionstructural constituent of ribosome
S80005840cellular_componentribosome
S80006412biological_processtranslation
S80022627cellular_componentcytosolic small ribosomal subunit
S81990904cellular_componentribonucleoprotein complex
S90003723molecular_functionRNA binding
S90003735molecular_functionstructural constituent of ribosome
S90005634cellular_componentnucleus
S90005730cellular_componentnucleolus
S90005737cellular_componentcytoplasm
S90005840cellular_componentribosome
S90006364biological_processrRNA processing
S90006412biological_processtranslation
S90015935cellular_componentsmall ribosomal subunit
S90019843molecular_functionrRNA binding
S90022627cellular_componentcytosolic small ribosomal subunit
S90042254biological_processribosome biogenesis
S90042274biological_processribosomal small subunit biogenesis
S91990904cellular_componentribonucleoprotein complex
Functional Information from PROSITE/UniProt
site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. AILIrqkkiwrrt.DGshimFedNaaVL
ChainResidueDetails
N3ALA85-LEU111

site_idPS00051
Number of Residues17
DetailsRIBOSOMAL_L39E Ribosomal protein L39e signature. MKehkGeyNrarRHWRS
ChainResidueDetails
O9MET30-SER46

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR
ChainResidueDetails
D3LYS57-ARG64

site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
E1LYS87-ASP112

site_idPS00358
Number of Residues17
DetailsRIBOSOMAL_L5 Ribosomal protein L5 signature. LeqLTGQkpVtSkARmT
ChainResidueDetails
M1LEU37-THR53

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. LrsHLniyRkDnsAkyrLilVssrmyrVarY
ChainResidueDetails
C3LEU98-TYR128

site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PrvRGVAmNPvE
ChainResidueDetails
L2PRO183-GLU194

site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FgvneniDtiGvTkGKGfqGtvkR
ChainResidueDetails
L3PHE205-ARG228

site_idPS00527
Number of Residues24
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. RsCvscytfrgiirkLMMCRrCFR
ChainResidueDetails
D9ARG31-ARG54

site_idPS00548
Number of Residues37
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. AKsvkfqdGvLihSgdaVkdyINtgyatveTkqGviG
ChainResidueDetails
S3ALA146-GLY182

site_idPS00578
Number of Residues12
DetailsRIBOSOMAL_S6E Ribosomal protein S6e signature. ITGGdDyqGfPM
ChainResidueDetails
S6ILE51-MET62

site_idPS00580
Number of Residues21
DetailsRIBOSOMAL_L32E Ribosomal protein L32e signature. FiRhhsdRykRVkps..WRRphG
ChainResidueDetails
O2PHE24-GLY44

site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GQktrIkAvvVVGDrk.GhVGiGtkask.EAas.AI
ChainResidueDetails
S2GLY80-ILE112

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. LYSSsrDkKVFSWDL
ChainResidueDetails
RALEU33-LEU47
RALEU170-LEU184
RAVAL272-THR286

site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VkLLIVSQSHLG
ChainResidueDetails
S0VAL19-GLY30

site_idPS00963
Number of Residues25
DetailsRIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrvLIVsDtyaDkqaIlEsqycNLP
ChainResidueDetails
S0PRO124-PRO148

site_idPS01145
Number of Residues14
DetailsRIBOSOMAL_L34E Ribosomal protein L34e signature. TrSnRrrkvRTPSG
ChainResidueDetails
O4THR14-GLY27

site_idPS01171
Number of Residues26
DetailsRIBOSOMAL_L21E Ribosomal protein L21e signature. GDmVdilvnpammk.GmpHkyYhGrTG
ChainResidueDetails
N1GLY36-GLY61

site_idPS01257
Number of Residues22
DetailsRIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqtGMRgSFGKPyGraARV
ChainResidueDetails
M0ALA108-VAL129

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsZN_FING: C4-type => ECO:0000255
ChainResidueDetails
O7CYS19-CYS37

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
O7CYS19
O7CYS22
O7CYS34
O7CYS37

222926

PDB entries from 2024-07-24

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