7QDG
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein,Fibritin | polymer | 1250 | 138930.7 | 3 | UniProt (P0DTC2) UniProt (P10104) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein,Collar protein,Whisker antigen control protein |
| 2 | D, E, F, G, H... (E, J, K, G, L...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 10 | In PDB GlyTouCan (G42666HT) | |||
| 3 | N (Q) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G05026ZL) | |||
| 4 | AA, BA, CA, DA, EA... (B, C, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 25 | Chemie (NAG) |
Sequence modifications
A, B, C: 15 - 1213 (UniProt: P0DTC2)
A, B, C: 1220 - 1248 (UniProt: P10104)
| PDB | External Database | Details |
|---|---|---|
| Val 222 | Ala 222 | conflict |
| Gly 614 | Asp 614 | conflict |
| - | Arg 682 | deletion |
| - | Arg 683 | deletion |
| - | Ala 684 | deletion |
| Ala 685 | Arg 685 | conflict |
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
| Leu 1214 | - | linker |
| Val 1215 | - | linker |
| Pro 1216 | - | linker |
| Arg 1217 | - | linker |
| Gly 1218 | - | linker |
| Ser 1219 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| His 1249 | - | expression tag |
| His 1250 | - | expression tag |
| His 1251 | - | expression tag |
| His 1252 | - | expression tag |
| His 1253 | - | expression tag |
| His 1254 | - | expression tag |
| His 1255 | - | expression tag |
| His 1256 | - | expression tag |
| His 1257 | - | expression tag |
| Glu 1258 | - | expression tag |
| Gln 1259 | - | expression tag |
| Lys 1260 | - | expression tag |
| Leu 1261 | - | expression tag |
| Ile 1262 | - | expression tag |
| Ser 1263 | - | expression tag |
| Glu 1264 | - | expression tag |
| Glu 1265 | - | expression tag |
| Asp 1266 | - | expression tag |
| Leu 1267 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 416792.2 | |
| Branched | Number of molecules | 11 |
| Total formula weight | 4668.4 | |
| Non-Polymers* | Number of molecules | 25 |
| Total formula weight | 5530.2 | |
| All* | Total formula weight | 426990.8 |
