7OY3
Crystal structure of depupylase Dop in complex with phosphorylated Pup and ADP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Depupylase | polymer | 508 | 57288.3 | 1 | UniProt (A0LU48) Pfam (PF03136) In PDB | Acidothermus cellulolyticus | |
| 2 | B | Prokaryotic ubiquitin-like protein Pup | polymer | 28 | 3279.4 | 1 | UniProt (A0LU49) Pfam (PF05639) In PDB | Acidothermus cellulolyticus | Bacterial ubiquitin-like modifier |
| 3 | A | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) | |||
| 4 | A | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 5 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 8 | Chemie (EDO) | |||
| 6 | A | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 7 | A | ACETATE ION | non-polymer | 59.0 | 2 | Chemie (ACT) | |||
| 8 | A | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 9 | A | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 1 | Chemie (PGE) | |||
| 10 | water | water | 18.0 | 463 | Chemie (HOH) |
Sequence modifications
A: 1 - 502 (UniProt: A0LU48)
| PDB | External Database | Details |
|---|---|---|
| Glu 503 | - | expression tag |
| Asn 504 | - | expression tag |
| Leu 505 | - | expression tag |
| Tyr 506 | - | expression tag |
| Phe 507 | - | expression tag |
| Gln 508 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 60567.7 | |
| Non-Polymers* | Number of molecules | 16 |
| Total formula weight | 1385.8 | |
| All* | Total formula weight | 61953.5 |
