7OUE
Crystal structure of a trapped Pab-AGOG/single-standed DNA covalent intermediate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E, G (A, C, E, G) | N-glycosylase/DNA lyase | polymer | 242 | 27982.5 | 4 | UniProt (Q9UZY0) Pfam (PF09171) | Pyrococcus abyssi (strain GE5 / Orsay) | 8-oxoguanine DNA glycosylase,AGOG,DNA-(apurinic or apyrimidinic site) lyase,AP lyase |
| 2 | B, D, F, H (B, D, F, H) | DNA (5'-D(*TP*TP*TP*(PED)P*TP*TP*TP*CP*T)-3') | polymer | 9 | 2555.7 | 4 | synthetic construct | ||
| 3 | I, K (C, G) | PHOSPHATE ION | non-polymer | 95.0 | 2 | Chemie (PO4) | |||
| 4 | J (E) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) | |||
| 5 | L, M, N, O, P... (A, B, C, D, E...) | water | water | 18.0 | 721 | Chemie (HOH) |
Sequence modifications
A, C, E, G: 1 - 239 (UniProt: Q9UZY0)
| PDB | External Database | Details |
|---|---|---|
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 122152.8 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 229.0 | |
| All* | Total formula weight | 122381.8 |
