7OPE
RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 23S rRNA | polymer | 2926 | 949010.9 | 1 | GenBank (CP053102.1) | Bacillus subtilis subsp. subtilis str. 168 | |
| 2 | B (B) | 5S rRNA | polymer | 119 | 38423.9 | 1 | GenBank (CP053102.1) | Bacillus subtilis subsp. subtilis str. 168 | |
| 3 | C (E) | 50S ribosomal protein L2 | polymer | 277 | 30335.1 | 1 | UniProt (P42919) Pfam (PF00181) Pfam (PF03947) | Bacillus subtilis subsp. subtilis str. 168 | BL2 |
| 4 | D (F) | 50S ribosomal protein L3 | polymer | 209 | 22723.3 | 1 | UniProt (P42920) Pfam (PF00297) | Bacillus subtilis subsp. subtilis str. 168 | BL3 |
| 5 | E (G) | 50S ribosomal protein L4 | polymer | 207 | 22425.0 | 1 | UniProt (P42921) Pfam (PF00573) | Bacillus subtilis subsp. subtilis str. 168 | |
| 6 | F (H) | 50S ribosomal protein L5 | polymer | 179 | 20177.6 | 1 | UniProt (P12877) Pfam (PF00281) Pfam (PF00673) | Bacillus subtilis subsp. subtilis str. 168 | BL6 |
| 7 | G (I) | 50S ribosomal protein L6 | polymer | 179 | 19543.4 | 1 | UniProt (P46898) Pfam (PF00347) | Bacillus subtilis subsp. subtilis str. 168 | BL10 |
| 8 | H (K) | 50S ribosomal protein L11 | polymer | 141 | 14951.4 | 1 | UniProt (Q06796) Pfam (PF03946) Pfam (PF00298) | Bacillus subtilis subsp. subtilis str. 168 | BL11 |
| 9 | I (L) | 50S ribosomal protein L10 | polymer | 166 | 18101.7 | 1 | UniProt (P42923) Pfam (PF00466) | Bacillus subtilis subsp. subtilis str. 168 | BL5,Cold acclimatization protein,CAP,Vegetative protein 300,VEG300 |
| 10 | J (N) | 50S ribosomal protein L13 | polymer | 145 | 16407.1 | 1 | UniProt (P70974) Pfam (PF00572) | Bacillus subtilis subsp. subtilis str. 168 | |
| 11 | K (O) | 50S ribosomal protein L14 | polymer | 122 | 13175.3 | 1 | UniProt (P12875) Pfam (PF00238) | Bacillus subtilis subsp. subtilis str. 168 | |
| 12 | L (P) | 50S ribosomal protein L15 | polymer | 146 | 15410.7 | 1 | UniProt (P19946) Pfam (PF00828) | Bacillus subtilis subsp. subtilis str. 168 | |
| 13 | M (Q) | 50S ribosomal protein L16 | polymer | 144 | 16223.0 | 1 | UniProt (P14577) Pfam (PF00252) | Bacillus subtilis subsp. subtilis str. 168 | |
| 14 | N (R) | 50S ribosomal protein L17 | polymer | 120 | 13774.8 | 1 | UniProt (P20277) Pfam (PF01196) | Bacillus subtilis subsp. subtilis str. 168 | BL15,BL21 |
| 15 | O (S) | 50S ribosomal protein L18 | polymer | 120 | 12993.8 | 1 | UniProt (P46899) Pfam (PF00861) | Bacillus subtilis subsp. subtilis str. 168 | BL16 |
| 16 | P (T) | 50S ribosomal protein L19 | polymer | 115 | 13416.9 | 1 | UniProt (O31742) Pfam (PF01245) | Bacillus subtilis subsp. subtilis str. 168 | |
| 17 | Q (U) | 50S ribosomal protein L20 | polymer | 119 | 13669.2 | 1 | UniProt (P55873) Pfam (PF00453) | Bacillus subtilis subsp. subtilis str. 168 | |
| 18 | R (V) | 50S ribosomal protein L21 | polymer | 102 | 11296.1 | 1 | UniProt (P26908) Pfam (PF00829) | Bacillus subtilis subsp. subtilis str. 168 | BL20 |
| 19 | S (W) | 50S ribosomal protein L22 | polymer | 113 | 12481.6 | 1 | UniProt (P42060) Pfam (PF00237) | Bacillus subtilis subsp. subtilis str. 168 | |
| 20 | T (X) | 50S ribosomal protein L23 | polymer | 95 | 10978.8 | 1 | UniProt (P42924) Pfam (PF00276) | Bacillus subtilis subsp. subtilis str. 168 | |
| 21 | U (Y) | 50S ribosomal protein L24 | polymer | 103 | 11166.1 | 1 | UniProt (P0CI78) Pfam (PF00467) Pfam (PF17136) | Bacillus subtilis subsp. subtilis str. 168 | 12 kDa DNA-binding protein,BL23,HPB12 |
| 22 | V (2) | tRNA-Ala-UGC | polymer | 76 | 24491.5 | 1 | Bacillus subtilis subsp. subtilis str. 168 | ||
| 23 | W (a) | 50S ribosomal protein L27 | polymer | 94 | 10391.9 | 1 | UniProt (P05657) Pfam (PF01016) | Bacillus subtilis subsp. subtilis str. 168 | BL24,BL30 |
| 24 | X (b) | 50S ribosomal protein L28 | polymer | 62 | 6826.1 | 1 | UniProt (P37807) Pfam (PF00830) | Bacillus subtilis subsp. subtilis str. 168 | |
| 25 | Y (c) | 50S ribosomal protein L29 | polymer | 66 | 7728.0 | 1 | UniProt (P12873) Pfam (PF00831) | Bacillus subtilis subsp. subtilis str. 168 | |
| 26 | Z (d) | 50S ribosomal protein L30 | polymer | 59 | 6650.8 | 1 | UniProt (P19947) Pfam (PF00327) | Bacillus subtilis subsp. subtilis str. 168 | BL27 |
| 27 | AA (f) | 50S ribosomal protein L32 | polymer | 59 | 6745.1 | 1 | UniProt (O34687) Pfam (PF01783) | Bacillus subtilis subsp. subtilis str. 168 | |
| 28 | BA (g) | 50S ribosomal protein L33 1 | polymer | 49 | 5915.9 | 1 | UniProt (P56849) Pfam (PF00471) | Bacillus subtilis subsp. subtilis str. 168 | |
| 29 | CA (h) | 50S ribosomal protein L34 | polymer | 44 | 5271.3 | 1 | UniProt (P05647) Pfam (PF00468) | Bacillus subtilis subsp. subtilis str. 168 | |
| 30 | DA (i) | 50S ribosomal protein L35 | polymer | 66 | 7581.1 | 1 | UniProt (P55874) Pfam (PF01632) | Bacillus subtilis subsp. subtilis str. 168 | |
| 31 | EA (j) | 50S ribosomal protein L36 | polymer | 37 | 4318.4 | 1 | UniProt (P20278) Pfam (PF00444) | Bacillus subtilis subsp. subtilis str. 168 | BL38,Ribosomal protein B,Ribosomal protein II |
| 32 | FA (1) | Uncharacterized protein YabO | polymer | 86 | 9737.3 | 1 | UniProt (P37557) Pfam (PF01479) | Bacillus subtilis subsp. subtilis str. 168 | |
| 33 | GA (0) | Rqc2 homolog RqcH | polymer | 599 | 68480.6 | 1 | UniProt (A0A6M4JI41) Pfam (PF05833) Pfam (PF05670) UniProt (by SIFTS) (O34693) | Bacillus subtilis subsp. subtilis str. 168 | RqcH |
Sequence modifications
0: -1 - 570 (UniProt: A0A6M4JI41)
| PDB | External Database | Details |
|---|---|---|
| Ala 97 | Asp 99 | conflict |
| Ala 98 | Arg 100 | conflict |
| Gly 571 | - | expression tag |
| Ser 572 | - | expression tag |
| Gly 573 | - | expression tag |
| Gly 574 | - | expression tag |
| Asp 575 | - | expression tag |
| Tyr 576 | - | expression tag |
| Lys 577 | - | expression tag |
| Asp 578 | - | expression tag |
| His 579 | - | expression tag |
| Asp 580 | - | expression tag |
| Gly 581 | - | expression tag |
| Asp 582 | - | expression tag |
| Tyr 583 | - | expression tag |
| Lys 584 | - | expression tag |
| Asp 585 | - | expression tag |
| His 586 | - | expression tag |
| Asp 587 | - | expression tag |
| Ile 588 | - | expression tag |
| Asp 589 | - | expression tag |
| Tyr 590 | - | expression tag |
| Lys 591 | - | expression tag |
| Asp 592 | - | expression tag |
| Asp 593 | - | expression tag |
| Asp 594 | - | expression tag |
| Asp 595 | - | expression tag |
| Lys 596 | - | expression tag |
| Gly 597 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 33 |
| Total formula weight | 1460823.9 | |
| All* | Total formula weight | 1460823.9 |
