7OIH
Glycosylation in the crystal structure of neutrophil myeloperoxidase
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Myeloperoxidase | polymer | 579 | 66011.5 | 8 | UniProt (P05164) Pfam (PF03098) | Homo sapiens (human) | MPO |
| 2 | CA, EA, I, J, Z (b, e, I, J, Y) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 5 | In PDB GlyTouCan (G15407YE) | |||
| 3 | K, L, N (c, g, L) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1260.2 | 3 | In PDB GlyTouCan (G45889JQ) | |||
| 4 | M, T (K, R) | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 2 | In PDB GlyTouCan (G09724ZC) | |||
| 5 | DA, FA, GA, O, Q... (d, f, S, M, O...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 6 | AA, P, S, U, X (Z, N, Q, T, W) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 5 | In PDB GlyTouCan (G82348BZ) | |||
| 7 | R (P) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
| 8 | V, Y (U, X) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 2 | In PDB GlyTouCan (G22573RC) | |||
| 9 | BA (a) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G56014GC) | |||
| 10 | AB, BB, BD, CC, DC... (B, G, E, C, H...) | CHLORIDE ION | non-polymer | 35.5 | 36 | Chemie (CL) | |||
| 11 | FC, GB, HD, KA, MC... (E, C, H, A, F...) | CALCIUM ION | non-polymer | 40.1 | 8 | Chemie (CA) | |||
| 12 | GC, ID, JB, LA, OC... (E, H, C, A, F...) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 8 | Chemie (HEM) | |||
| 13 | AD, HC, JD, KB, MA... (G, E, H, C, A...) | THIOCYANATE ION | non-polymer | 58.1 | 10 | Chemie (SCN) | |||
| 14 | KD, NA, QC, VB (H, A, F, D) | Paroxetine | non-polymer | 329.4 | 4 | Chemie (8PR) | |||
| 15 | AC, BC, CB, CD, DB... (D, B, G, E, H...) | PHOSPHATE ION | non-polymer | 95.0 | 14 | Chemie (PO4) | |||
| 16 | HB, IB, SB, VA, WA (C, D, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) | |||
| 17 | OD, PD, QD, RD, SD... (A, B, C, D, E...) | water | water | 18.0 | 2428 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 528091.9 | |
| Branched | Number of molecules | 25 |
| Total formula weight | 20009.3 | |
| Non-Polymers* | Number of molecules | 85 |
| Total formula weight | 10862.7 | |
| All* | Total formula weight | 558964.0 |
