7OBQ
SRP-SR at the distal site conformation
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | SRP RNA | polymer | 249 | 80701.9 | 1 | Canis lupus familiaris (dog) | ||
| 2 | B (q) | Signal recognition particle 19 | polymer | 144 | 16183.7 | 1 | UniProt (J9PAS6) Pfam (PF01922) | Canis lupus familiaris (dog) | |
| 3 | C (s) | EM14S01-3B_G0054400.mRNA.1.CDS.1 | polymer | 62 | 5294.5 | 1 | UniProt (A0A7I9EWR8) | Saccharomyces cerevisiae (Baker's yeast) | |
| 4 | D (u) | Signal recognition particle subunit SRP68,Signal recognition particle subunit SRP68 | polymer | 622 | 67082.9 | 1 | UniProt (Q00004) Pfam (PF16969) | Canis lupus familiaris (dog) | SRP68,Signal recognition particle 68 kDa protein,SRP68,Signal recognition particle 68 kDa protein |
| 5 | E (v) | Signal recognition particle receptor subunit beta | polymer | 271 | 29846.2 | 1 | UniProt (G1STG2) Pfam (PF09439) | Oryctolagus cuniculus (rabbit) | |
| 6 | F (x) | Signal recognition particle 54 kDa protein | polymer | 504 | 55775.7 | 1 | UniProt (P61010) Pfam (PF02881) Pfam (PF00448) Pfam (PF02978) | Canis lupus familiaris (dog) | SRP54 |
| 7 | G (y) | SRP receptor subunit alpha | polymer | 637 | 69745.9 | 1 | UniProt (A0A5F9CI80) Pfam (PF04086) Pfam (PF02881) Pfam (PF00448) | Oryctolagus cuniculus (rabbit) | |
| 8 | H (z) | Signal recognition particle subunit SRP72 | polymer | 671 | 74608.1 | 1 | UniProt (P33731) Pfam (PF17004) Pfam (PF13181) Pfam (PF08492) | Canis lupus familiaris (dog) | SRP72,Signal recognition particle 72 kDa protein |
| 9 | I, L, N (v, x, y) | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) PubChem (888) | |||
| 10 | J (v) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) PubChem (177679032) PubChem (135400627) PubChem (135487750) PubChem (136088935) PubChem (136803486) PubChem (135398633) PubChem (135544356) PubChem (135547949) PubChem (135600366) PubChem (135749822) PubChem (136005188) PubChem (136073923) PubChem (136240914) PubChem (136664747) PubChem (136772743) PubChem (136772744) PubChem (136803487) PubChem (137286749) PubChem (164715984) PubChem (171699466) | |||
| 11 | K, M (x, y) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 2 | Chemie (GNP) |
Sequence modifications
s: 1 - 62 (UniProt: A0A7I9EWR8)
u: 1 - 494 (UniProt: Q00004)
u: 494 - 622 (UniProt: Q00004)
| PDB | External Database | Details |
|---|---|---|
| Unk 1 | Met 1 | conflict |
| Unk 2 | Glu 2 | conflict |
| Unk 3 | Gly 3 | conflict |
| Unk 4 | Gly 4 | conflict |
| Unk 5 | Glu 5 | conflict |
| Unk 6 | Glu 6 | conflict |
| Unk 7 | Glu 7 | conflict |
| Unk 8 | Val 8 | conflict |
| Unk 9 | Glu 9 | conflict |
| Unk 10 | Arg 10 | conflict |
| Unk 11 | Ile 11 | conflict |
| Unk 12 | Pro 12 | conflict |
| Unk 13 | Asp 13 | conflict |
| Unk 14 | Glu 14 | conflict |
| Unk 15 | Leu 15 | conflict |
| Unk 16 | Phe 16 | conflict |
| Unk 17 | Asp 17 | conflict |
| Unk 18 | Thr 18 | conflict |
| Unk 19 | Lys 19 | conflict |
| Unk 20 | Lys 20 | conflict |
| Unk 21 | Lys 21 | conflict |
| Unk 22 | His 22 | conflict |
| Unk 23 | Leu 23 | conflict |
| Unk 24 | Leu 24 | conflict |
| Unk 25 | Asp 25 | conflict |
| Unk 26 | Lys 26 | conflict |
| Unk 27 | Leu 27 | conflict |
| Unk 28 | Ile 28 | conflict |
| Unk 29 | Arg 29 | conflict |
| Unk 30 | Val 30 | conflict |
| Unk 31 | Gly 31 | conflict |
| Unk 32 | Ile 32 | conflict |
| Unk 33 | Ile 33 | conflict |
| Unk 34 | Leu 34 | conflict |
| Unk 35 | Val 35 | conflict |
| Unk 36 | Leu 36 | conflict |
| Unk 37 | Leu 37 | conflict |
| Unk 38 | Ile 38 | conflict |
| Unk 39 | Trp 39 | conflict |
| Unk 40 | Gly 40 | conflict |
| Unk 41 | Thr 41 | conflict |
| Unk 42 | Val 42 | conflict |
| Unk 43 | Leu 43 | conflict |
| Unk 44 | Leu 44 | conflict |
| Unk 45 | Leu 45 | conflict |
| Unk 46 | Lys 46 | conflict |
| Unk 47 | Ser 47 | conflict |
| Unk 48 | Ile 48 | conflict |
| Unk 49 | Pro 49 | conflict |
| Unk 50 | His 50 | conflict |
| Unk 51 | His 51 | conflict |
| Unk 52 | Ser 52 | conflict |
| Unk 53 | Asn 53 | conflict |
| Unk 54 | Thr 54 | conflict |
| Unk 55 | Pro 55 | conflict |
| Unk 56 | Asp 56 | conflict |
| Unk 57 | Tyr 57 | conflict |
| Unk 58 | Gln 58 | conflict |
| Unk 59 | Glu 59 | conflict |
| Unk 60 | Pro 60 | conflict |
| Unk 61 | Asn 61 | conflict |
| Unk 62 | Ser 62 | conflict |
u: 494 - 622 (UniProt: Q00004)
| PDB | External Database | Details |
|---|---|---|
| Unk 494 | Ser 494 | conflict |
| Unk 494 | Asp 495 | conflict |
| Unk 494 | Ala 496 | conflict |
| Unk 494 | Gly 497 | conflict |
| Unk 494 | Ala 498 | conflict |
| Unk 494 | Phe 499 | conflict |
| Unk 494 | Arg 500 | conflict |
| Unk 494 | Asn 501 | conflict |
| Unk 494 | Ser 502 | conflict |
| Unk 494 | Leu 503 | conflict |
| Unk 494 | Lys 504 | conflict |
| Unk 494 | Asp 505 | conflict |
| Unk 494 | Leu 506 | conflict |
| Unk 494 | Pro 507 | conflict |
| Unk 494 | Asp 508 | conflict |
| Unk 494 | Val 509 | conflict |
| Unk 494 | Gln 510 | conflict |
| Unk 511 | Glu 511 | conflict |
| Unk 512 | Leu 512 | conflict |
| Unk 513 | Ile 513 | conflict |
| Unk 514 | Thr 514 | conflict |
| Unk 515 | Gln 515 | conflict |
| Unk 516 | Val 516 | conflict |
| Unk 517 | Arg 517 | conflict |
| Unk 518 | Ser 518 | conflict |
| Unk 519 | Glu 519 | conflict |
| Unk 520 | Lys 520 | conflict |
| Unk 521 | Cys 521 | conflict |
| Unk 522 | Ser 522 | conflict |
| Unk 523 | Leu 523 | conflict |
| Unk 524 | Gln 524 | conflict |
| Unk 525 | Ala 525 | conflict |
| Unk 526 | Ala 526 | conflict |
| Unk 527 | Ala 527 | conflict |
| Unk 528 | Ile 528 | conflict |
| Unk 529 | Leu 529 | conflict |
| Unk 530 | Asp 530 | conflict |
| Unk 531 | Ala 531 | conflict |
| Unk 532 | Ser 532 | conflict |
| Unk 533 | Asp 533 | conflict |
| Unk 534 | Ser 534 | conflict |
| Unk 535 | His 535 | conflict |
| Unk 536 | Gln 536 | conflict |
| Unk 537 | Pro 537 | conflict |
| Unk 538 | Glu 538 | conflict |
| Unk 539 | Thr 539 | conflict |
| Unk 540 | Ser 540 | conflict |
| Unk 541 | Ser 541 | conflict |
| Unk 542 | Gln 542 | conflict |
| Unk 543 | Val 543 | conflict |
| Unk 544 | Lys 544 | conflict |
| Unk 545 | Asp 545 | conflict |
| Unk 546 | Asn 546 | conflict |
| Unk 547 | Lys 547 | conflict |
| Unk 548 | Pro 548 | conflict |
| Unk 549 | Leu 549 | conflict |
| Unk 550 | Val 550 | conflict |
| Unk 551 | Glu 551 | conflict |
| Unk 552 | Arg 552 | conflict |
| Unk 553 | Phe 553 | conflict |
| Unk 554 | Glu 554 | conflict |
| Unk 555 | Thr 555 | conflict |
| Unk 556 | Phe 556 | conflict |
| Unk 557 | Cys 557 | conflict |
| Unk 558 | Leu 558 | conflict |
| Unk 559 | Asp 559 | conflict |
| Unk 560 | Pro 560 | conflict |
| Unk 561 | Ser 561 | conflict |
| Unk 562 | Leu 562 | conflict |
| Unk 563 | Val 563 | conflict |
| Unk 564 | Thr 564 | conflict |
| Unk 565 | Lys 565 | conflict |
| Unk 566 | Gln 566 | conflict |
| Unk 567 | Ala 567 | conflict |
| Unk 568 | Asn 568 | conflict |
| Unk 569 | Leu 569 | conflict |
| Unk 570 | Val 570 | conflict |
| Unk 571 | His 571 | conflict |
| Unk 572 | Phe 572 | conflict |
| Unk 573 | Pro 573 | conflict |
| Unk 574 | Pro 574 | conflict |
| Unk 575 | Gly 575 | conflict |
| Unk 576 | Phe 576 | conflict |
| Unk 577 | Gln 577 | conflict |
| Unk 578 | Pro 578 | conflict |
| Unk 579 | Ile 579 | conflict |
| Unk 580 | Pro 580 | conflict |
| Unk 581 | Cys 581 | conflict |
| Unk 582 | Lys 582 | conflict |
| Unk 583 | Pro 583 | conflict |
| Unk 584 | Leu 584 | conflict |
| Unk 585 | Phe 585 | conflict |
| Unk 586 | Phe 586 | conflict |
| Unk 587 | Asp 587 | conflict |
| Unk 588 | Leu 588 | conflict |
| Unk 589 | Ala 589 | conflict |
| Unk 590 | Leu 590 | conflict |
| Unk 591 | Asn 591 | conflict |
| Unk 592 | His 592 | conflict |
| Unk 593 | Val 593 | conflict |
| Unk 594 | Ala 594 | conflict |
| Unk 595 | Phe 595 | conflict |
| Unk 596 | Pro 596 | conflict |
| Unk 597 | Pro 597 | conflict |
| Unk 598 | Leu 598 | conflict |
| Unk 599 | Glu 599 | conflict |
| Unk 600 | Asp 600 | conflict |
| Unk 601 | Lys 601 | conflict |
| Unk 602 | Leu 602 | conflict |
| Unk 603 | Glu 603 | conflict |
| Unk 604 | Gln 604 | conflict |
| Unk 605 | Lys 605 | conflict |
| Unk 606 | Thr 606 | conflict |
| Unk 607 | Lys 607 | conflict |
| Unk 608 | Ser 608 | conflict |
| Unk 609 | Gly 609 | conflict |
| Unk 610 | Leu 610 | conflict |
| Unk 611 | Thr 611 | conflict |
| Unk 612 | Gly 612 | conflict |
| Unk 613 | Tyr 613 | conflict |
| Unk 614 | Ile 614 | conflict |
| Unk 615 | Lys 615 | conflict |
| Unk 616 | Gly 616 | conflict |
| Unk 617 | Ile 617 | conflict |
| Unk 618 | Phe 618 | conflict |
| Unk 619 | Gly 619 | conflict |
| Unk 620 | Phe 620 | conflict |
| Unk 621 | Arg 621 | conflict |
| Unk 622 | Ser 622 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 399238.9 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1640.5 | |
| All* | Total formula weight | 400879.4 |
