7OBQ
SRP-SR at the distal site conformation
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 1 | SRP RNA | polymer | 249 | 80701.9 | 1 | Canis lupus familiaris (dog) | ||
| 2 | q | Signal recognition particle 19 | polymer | 144 | 16183.7 | 1 | UniProt (J9PAS6) Pfam (PF01922) In PDB | Canis lupus familiaris (dog) | |
| 3 | s | EM14S01-3B_G0054400.mRNA.1.CDS.1 | polymer | 62 | 5294.5 | 1 | UniProt (A0A7I9EWR8) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
| 4 | u | Signal recognition particle subunit SRP68,Signal recognition particle subunit SRP68 | polymer | 622 | 67082.9 | 1 | UniProt (Q00004) Pfam (PF16969) In PDB | Canis lupus familiaris (dog) | SRP68,Signal recognition particle 68 kDa protein,SRP68,Signal recognition particle 68 kDa protein |
| 5 | v | Signal recognition particle receptor subunit beta | polymer | 271 | 29846.2 | 1 | UniProt (G1STG2) Pfam (PF09439) In PDB | Oryctolagus cuniculus (rabbit) | |
| 6 | x | Signal recognition particle 54 kDa protein | polymer | 504 | 55775.7 | 1 | UniProt (P61010) Pfam (PF02881) Pfam (PF00448) Pfam (PF02978) In PDB | Canis lupus familiaris (dog) | SRP54 |
| 7 | y | SRP receptor subunit alpha | polymer | 637 | 69745.9 | 1 | UniProt (A0A5F9CI80) Pfam (PF04086) Pfam (PF02881) Pfam (PF00448) In PDB | Oryctolagus cuniculus (rabbit) | |
| 8 | z | Signal recognition particle subunit SRP72 | polymer | 671 | 74608.1 | 1 | UniProt (P33731) Pfam (PF17004) Pfam (PF13181) Pfam (PF08492) In PDB | Canis lupus familiaris (dog) | SRP72,Signal recognition particle 72 kDa protein |
| 9 | v, x, y | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) | |||
| 10 | v | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
| 11 | x, y | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 2 | Chemie (GNP) |
Sequence modifications
s: 1 - 62 (UniProt: A0A7I9EWR8)
u: 1 - 494 (UniProt: Q00004)
u: 494 - 622 (UniProt: Q00004)
| PDB | External Database | Details |
|---|---|---|
| Unk 1 | Met 1 | conflict |
| Unk 2 | Glu 2 | conflict |
| Unk 3 | Gly 3 | conflict |
| Unk 4 | Gly 4 | conflict |
| Unk 5 | Glu 5 | conflict |
| Unk 6 | Glu 6 | conflict |
| Unk 7 | Glu 7 | conflict |
| Unk 8 | Val 8 | conflict |
| Unk 9 | Glu 9 | conflict |
| Unk 10 | Arg 10 | conflict |
| Unk 11 | Ile 11 | conflict |
| Unk 12 | Pro 12 | conflict |
| Unk 13 | Asp 13 | conflict |
| Unk 14 | Glu 14 | conflict |
| Unk 15 | Leu 15 | conflict |
| Unk 16 | Phe 16 | conflict |
| Unk 17 | Asp 17 | conflict |
| Unk 18 | Thr 18 | conflict |
| Unk 19 | Lys 19 | conflict |
| Unk 20 | Lys 20 | conflict |
| Unk 21 | Lys 21 | conflict |
| Unk 22 | His 22 | conflict |
| Unk 23 | Leu 23 | conflict |
| Unk 24 | Leu 24 | conflict |
| Unk 25 | Asp 25 | conflict |
| Unk 26 | Lys 26 | conflict |
| Unk 27 | Leu 27 | conflict |
| Unk 28 | Ile 28 | conflict |
| Unk 29 | Arg 29 | conflict |
| Unk 30 | Val 30 | conflict |
| Unk 31 | Gly 31 | conflict |
| Unk 32 | Ile 32 | conflict |
| Unk 33 | Ile 33 | conflict |
| Unk 34 | Leu 34 | conflict |
| Unk 35 | Val 35 | conflict |
| Unk 36 | Leu 36 | conflict |
| Unk 37 | Leu 37 | conflict |
| Unk 38 | Ile 38 | conflict |
| Unk 39 | Trp 39 | conflict |
| Unk 40 | Gly 40 | conflict |
| Unk 41 | Thr 41 | conflict |
| Unk 42 | Val 42 | conflict |
| Unk 43 | Leu 43 | conflict |
| Unk 44 | Leu 44 | conflict |
| Unk 45 | Leu 45 | conflict |
| Unk 46 | Lys 46 | conflict |
| Unk 47 | Ser 47 | conflict |
| Unk 48 | Ile 48 | conflict |
| Unk 49 | Pro 49 | conflict |
| Unk 50 | His 50 | conflict |
| Unk 51 | His 51 | conflict |
| Unk 52 | Ser 52 | conflict |
| Unk 53 | Asn 53 | conflict |
| Unk 54 | Thr 54 | conflict |
| Unk 55 | Pro 55 | conflict |
| Unk 56 | Asp 56 | conflict |
| Unk 57 | Tyr 57 | conflict |
| Unk 58 | Gln 58 | conflict |
| Unk 59 | Glu 59 | conflict |
| Unk 60 | Pro 60 | conflict |
| Unk 61 | Asn 61 | conflict |
| Unk 62 | Ser 62 | conflict |
u: 494 - 622 (UniProt: Q00004)
| PDB | External Database | Details |
|---|---|---|
| Unk 494 | Ser 494 | conflict |
| Unk 494 | Asp 495 | conflict |
| Unk 494 | Ala 496 | conflict |
| Unk 494 | Gly 497 | conflict |
| Unk 494 | Ala 498 | conflict |
| Unk 494 | Phe 499 | conflict |
| Unk 494 | Arg 500 | conflict |
| Unk 494 | Asn 501 | conflict |
| Unk 494 | Ser 502 | conflict |
| Unk 494 | Leu 503 | conflict |
| Unk 494 | Lys 504 | conflict |
| Unk 494 | Asp 505 | conflict |
| Unk 494 | Leu 506 | conflict |
| Unk 494 | Pro 507 | conflict |
| Unk 494 | Asp 508 | conflict |
| Unk 494 | Val 509 | conflict |
| Unk 494 | Gln 510 | conflict |
| Unk 511 | Glu 511 | conflict |
| Unk 512 | Leu 512 | conflict |
| Unk 513 | Ile 513 | conflict |
| Unk 514 | Thr 514 | conflict |
| Unk 515 | Gln 515 | conflict |
| Unk 516 | Val 516 | conflict |
| Unk 517 | Arg 517 | conflict |
| Unk 518 | Ser 518 | conflict |
| Unk 519 | Glu 519 | conflict |
| Unk 520 | Lys 520 | conflict |
| Unk 521 | Cys 521 | conflict |
| Unk 522 | Ser 522 | conflict |
| Unk 523 | Leu 523 | conflict |
| Unk 524 | Gln 524 | conflict |
| Unk 525 | Ala 525 | conflict |
| Unk 526 | Ala 526 | conflict |
| Unk 527 | Ala 527 | conflict |
| Unk 528 | Ile 528 | conflict |
| Unk 529 | Leu 529 | conflict |
| Unk 530 | Asp 530 | conflict |
| Unk 531 | Ala 531 | conflict |
| Unk 532 | Ser 532 | conflict |
| Unk 533 | Asp 533 | conflict |
| Unk 534 | Ser 534 | conflict |
| Unk 535 | His 535 | conflict |
| Unk 536 | Gln 536 | conflict |
| Unk 537 | Pro 537 | conflict |
| Unk 538 | Glu 538 | conflict |
| Unk 539 | Thr 539 | conflict |
| Unk 540 | Ser 540 | conflict |
| Unk 541 | Ser 541 | conflict |
| Unk 542 | Gln 542 | conflict |
| Unk 543 | Val 543 | conflict |
| Unk 544 | Lys 544 | conflict |
| Unk 545 | Asp 545 | conflict |
| Unk 546 | Asn 546 | conflict |
| Unk 547 | Lys 547 | conflict |
| Unk 548 | Pro 548 | conflict |
| Unk 549 | Leu 549 | conflict |
| Unk 550 | Val 550 | conflict |
| Unk 551 | Glu 551 | conflict |
| Unk 552 | Arg 552 | conflict |
| Unk 553 | Phe 553 | conflict |
| Unk 554 | Glu 554 | conflict |
| Unk 555 | Thr 555 | conflict |
| Unk 556 | Phe 556 | conflict |
| Unk 557 | Cys 557 | conflict |
| Unk 558 | Leu 558 | conflict |
| Unk 559 | Asp 559 | conflict |
| Unk 560 | Pro 560 | conflict |
| Unk 561 | Ser 561 | conflict |
| Unk 562 | Leu 562 | conflict |
| Unk 563 | Val 563 | conflict |
| Unk 564 | Thr 564 | conflict |
| Unk 565 | Lys 565 | conflict |
| Unk 566 | Gln 566 | conflict |
| Unk 567 | Ala 567 | conflict |
| Unk 568 | Asn 568 | conflict |
| Unk 569 | Leu 569 | conflict |
| Unk 570 | Val 570 | conflict |
| Unk 571 | His 571 | conflict |
| Unk 572 | Phe 572 | conflict |
| Unk 573 | Pro 573 | conflict |
| Unk 574 | Pro 574 | conflict |
| Unk 575 | Gly 575 | conflict |
| Unk 576 | Phe 576 | conflict |
| Unk 577 | Gln 577 | conflict |
| Unk 578 | Pro 578 | conflict |
| Unk 579 | Ile 579 | conflict |
| Unk 580 | Pro 580 | conflict |
| Unk 581 | Cys 581 | conflict |
| Unk 582 | Lys 582 | conflict |
| Unk 583 | Pro 583 | conflict |
| Unk 584 | Leu 584 | conflict |
| Unk 585 | Phe 585 | conflict |
| Unk 586 | Phe 586 | conflict |
| Unk 587 | Asp 587 | conflict |
| Unk 588 | Leu 588 | conflict |
| Unk 589 | Ala 589 | conflict |
| Unk 590 | Leu 590 | conflict |
| Unk 591 | Asn 591 | conflict |
| Unk 592 | His 592 | conflict |
| Unk 593 | Val 593 | conflict |
| Unk 594 | Ala 594 | conflict |
| Unk 595 | Phe 595 | conflict |
| Unk 596 | Pro 596 | conflict |
| Unk 597 | Pro 597 | conflict |
| Unk 598 | Leu 598 | conflict |
| Unk 599 | Glu 599 | conflict |
| Unk 600 | Asp 600 | conflict |
| Unk 601 | Lys 601 | conflict |
| Unk 602 | Leu 602 | conflict |
| Unk 603 | Glu 603 | conflict |
| Unk 604 | Gln 604 | conflict |
| Unk 605 | Lys 605 | conflict |
| Unk 606 | Thr 606 | conflict |
| Unk 607 | Lys 607 | conflict |
| Unk 608 | Ser 608 | conflict |
| Unk 609 | Gly 609 | conflict |
| Unk 610 | Leu 610 | conflict |
| Unk 611 | Thr 611 | conflict |
| Unk 612 | Gly 612 | conflict |
| Unk 613 | Tyr 613 | conflict |
| Unk 614 | Ile 614 | conflict |
| Unk 615 | Lys 615 | conflict |
| Unk 616 | Gly 616 | conflict |
| Unk 617 | Ile 617 | conflict |
| Unk 618 | Phe 618 | conflict |
| Unk 619 | Gly 619 | conflict |
| Unk 620 | Phe 620 | conflict |
| Unk 621 | Arg 621 | conflict |
| Unk 622 | Ser 622 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 399238.9 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1640.5 | |
| All* | Total formula weight | 400879.4 |
