7NHN
VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | Lmo0919 protein | polymer | 567 | 64280.1 | 1 | UniProt (Q8Y8I3) Pfam (PF00005) Pfam (PF12848) | Listeria monocytogenes EGD-e | |
| 2 | B (D) | tRNA-fMet | polymer | 77 | 24788.8 | 1 | Listeria monocytogenes EGD-e | ||
| 3 | C (b) | RNA (5'-R(P*GP*AP*GP*GP*UP*NP*NP*NP*NP*NP*NP*AP*UP*G)-3') | polymer | 14 | 3783.2 | 1 | Listeria monocytogenes EGD-e | ||
| 4 | D (A) | 23S rRNA | polymer | 2928 | 949689.8 | 1 | Listeria monocytogenes EGD-e | ||
| 5 | E (a) | 16S rRNA | polymer | 1542 | 499378.5 | 1 | GenBank (CP023861.1) | Listeria monocytogenes EGD-e | |
| 6 | F (G) | 50S ribosomal protein L2 | polymer | 277 | 30568.4 | 1 | UniProt (P60426) Pfam (PF00181) Pfam (PF03947) | Listeria monocytogenes EGD-e | |
| 7 | G (H) | 50S ribosomal protein L3 | polymer | 209 | 22863.5 | 1 | UniProt (Q8Y440) Pfam (PF00297) | Listeria monocytogenes EGD-e | |
| 8 | H (I) | 50S ribosomal protein L4 | polymer | 207 | 22640.3 | 1 | UniProt (P61055) Pfam (PF00573) | Listeria monocytogenes EGD-e | |
| 9 | I (J) | 50S ribosomal protein L5 | polymer | 179 | 20023.2 | 1 | UniProt (Q927L9) Pfam (PF00281) Pfam (PF00673) | Listeria monocytogenes EGD-e | |
| 10 | J (K) | 50S ribosomal protein L6 | polymer | 178 | 19434.4 | 1 | UniProt (Q8Y444) Pfam (PF00347) | Listeria monocytogenes EGD-e | |
| 11 | K (M) | 50S ribosomal protein L13 | polymer | 145 | 16227.7 | 1 | UniProt (Q8Y458) Pfam (PF00572) | Listeria monocytogenes EGD-e | |
| 12 | L (N) | 50S ribosomal protein L14 | polymer | 122 | 13248.4 | 1 | UniProt (Q927L7) Pfam (PF00238) | Listeria monocytogenes EGD-e | |
| 13 | M (O) | 50S ribosomal protein L15 | polymer | 146 | 15812.1 | 1 | UniProt (Q8Y447) Pfam (PF00828) | Listeria monocytogenes EGD-e | |
| 14 | N (P) | 50S ribosomal protein L16 | polymer | 144 | 16171.0 | 1 | UniProt (Q927L4) Pfam (PF00252) | Listeria monocytogenes EGD-e | |
| 15 | O (Q) | 50S ribosomal protein L17 | polymer | 135 | 15246.8 | 1 | UniProt (Q8Y450) Pfam (PF01196) | Listeria monocytogenes EGD-e | |
| 16 | P (R) | 50S ribosomal protein L18 | polymer | 119 | 13121.9 | 1 | UniProt (Q8Y445) Pfam (PF00861) | Listeria monocytogenes EGD-e | |
| 17 | Q (S) | 50S ribosomal protein L19 | polymer | 114 | 13146.5 | 1 | UniProt (O53083) Pfam (PF01245) | Listeria monocytogenes EGD-e | |
| 18 | R (T) | 50S ribosomal protein L20 | polymer | 119 | 13719.4 | 1 | UniProt (P66103) Pfam (PF00453) | Listeria monocytogenes EGD-e | |
| 19 | S (U) | 50S ribosomal protein L21 | polymer | 102 | 11234.0 | 1 | UniProt (Q8Y6Y9) Pfam (PF00829) | Listeria monocytogenes EGD-e | |
| 20 | T (V) | 50S ribosomal protein L22 | polymer | 118 | 12895.9 | 1 | UniProt (Q927L2) Pfam (PF00237) | Listeria monocytogenes EGD-e | |
| 21 | U (W) | 50S ribosomal protein L23 | polymer | 94 | 10935.7 | 1 | UniProt (Q8Y441) Pfam (PF00276) | Listeria monocytogenes EGD-e | |
| 22 | V (X) | 50S ribosomal protein L24 | polymer | 103 | 11205.3 | 1 | UniProt (Q8Y443) Pfam (PF00467) Pfam (PF17136) | Listeria monocytogenes EGD-e | |
| 23 | W (Z) | 50S ribosomal protein L27 | polymer | 96 | 10571.9 | 1 | UniProt (P66125) Pfam (PF01016) | Listeria monocytogenes EGD-e | |
| 24 | X (1) | 50S ribosomal protein L28 | polymer | 62 | 7010.4 | 1 | UniProt (P66144) Pfam (PF00830) | Listeria monocytogenes EGD-e | |
| 25 | Y (2) | 50S ribosomal protein L29 | polymer | 63 | 7414.5 | 1 | UniProt (P66166) Pfam (PF00831) | Listeria monocytogenes EGD-e | |
| 26 | Z (3) | 50S ribosomal protein L30 | polymer | 59 | 6504.8 | 1 | UniProt (Q927M5) Pfam (PF00327) | Listeria monocytogenes EGD-e | |
| 27 | AA (5) | 50S ribosomal protein L32-2 | polymer | 57 | 6534.6 | 1 | UniProt (P66207) Pfam (PF01783) | Listeria monocytogenes EGD-e | |
| 28 | BA (6) | 50S ribosomal protein L33 1 | polymer | 49 | 6021.0 | 1 | UniProt (P66219) Pfam (PF00471) | Listeria monocytogenes EGD-e | |
| 29 | CA (7) | 50S ribosomal protein L34 | polymer | 44 | 5319.5 | 1 | UniProt (P66248) Pfam (PF00468) | Listeria monocytogenes EGD-e | |
| 30 | DA (8) | 50S ribosomal protein L35 | polymer | 66 | 7746.4 | 1 | UniProt (P0A491) Pfam (PF01632) | Listeria monocytogenes EGD-e | |
| 31 | EA (9) | 50S ribosomal protein L36 | polymer | 37 | 4336.5 | 1 | UniProt (P66290) Pfam (PF00444) | Listeria monocytogenes EGD-e | |
| 32 | FA (B) | 5S rRNA | polymer | 114 | 36692.7 | 1 | Listeria monocytogenes EGD-E | ||
| 33 | GA (c) | 30S ribosomal protein S2 | polymer | 249 | 28417.8 | 1 | UniProt (Q8Y6M6) Pfam (PF00318) | Listeria monocytogenes EGD-e | |
| 34 | HA (d) | 30S ribosomal protein S3 | polymer | 218 | 24587.2 | 1 | UniProt (P66548) Pfam (PF07650) Pfam (PF00189) | Listeria monocytogenes EGD-e | |
| 35 | IA (e) | 30S ribosomal protein S4 | polymer | 200 | 22774.0 | 1 | UniProt (Q8Y6T6) Pfam (PF00163) Pfam (PF01479) | Listeria monocytogenes EGD-e | |
| 36 | JA (f) | 30S ribosomal protein S5 | polymer | 167 | 17482.2 | 1 | UniProt (Q8Y446) Pfam (PF00333) Pfam (PF03719) | Listeria monocytogenes EGD-e | |
| 37 | KA (g) | 30S ribosomal protein S6 | polymer | 97 | 11526.1 | 1 | UniProt (Q8YAR9) Pfam (PF01250) | Listeria monocytogenes EGD-e | |
| 38 | LA (h) | 30S ribosomal protein S7 | polymer | 156 | 17848.8 | 1 | UniProt (P66611) Pfam (PF00177) | Listeria monocytogenes EGD-e | |
| 39 | MA (i) | 30S ribosomal protein S8 | polymer | 132 | 14667.1 | 1 | UniProt (P66623) Pfam (PF00410) | Listeria monocytogenes EGD-e | |
| 40 | NA (j) | 30S ribosomal protein S9 | polymer | 130 | 14397.6 | 1 | UniProt (Q8Y459) Pfam (PF00380) | Listeria monocytogenes EGD-e | |
| 41 | OA (k) | 30S ribosomal protein S10 | polymer | 102 | 11703.7 | 1 | UniProt (P66330) Pfam (PF00338) | Listeria monocytogenes EGD-e | |
| 42 | PA (l) | 30S ribosomal protein S11 | polymer | 129 | 13812.9 | 1 | UniProt (P66352) Pfam (PF00411) | Listeria monocytogenes EGD-e | |
| 43 | QA (m) | 30S ribosomal protein S12 | polymer | 137 | 15216.8 | 1 | UniProt (P66372) Pfam (PF00164) | Listeria monocytogenes EGD-e | |
| 44 | RA (n) | 30S ribosomal protein S13 | polymer | 121 | 13739.0 | 1 | UniProt (P66383) Pfam (PF00416) | Listeria monocytogenes EGD-e | |
| 45 | SA (o) | 30S ribosomal protein S14 type Z | polymer | 61 | 7164.7 | 1 | UniProt (P66401) Pfam (PF00253) | Listeria monocytogenes EGD-e | |
| 46 | TA (p) | 30S ribosomal protein S15 | polymer | 89 | 10656.4 | 1 | UniProt (Q92C24) Pfam (PF00312) | Listeria monocytogenes EGD-e | |
| 47 | UA (q) | 30S ribosomal protein S16 | polymer | 90 | 10386.2 | 1 | UniProt (Q8Y699) Pfam (PF00886) | Listeria monocytogenes EGD-e | |
| 48 | VA (r) | 30S ribosomal protein S17 | polymer | 87 | 10057.7 | 1 | UniProt (Q927L6) Pfam (PF00366) | Listeria monocytogenes EGD-e | |
| 49 | WA (s) | 30S ribosomal protein S18 | polymer | 79 | 9119.8 | 1 | UniProt (P66461) Pfam (PF01084) | Listeria monocytogenes EGD-e | |
| 50 | XA (t) | 30S ribosomal protein S19 | polymer | 92 | 10498.1 | 1 | UniProt (P66484) Pfam (PF00203) | Listeria monocytogenes EGD-e | |
| 51 | YA (u) | 30S ribosomal protein S20 | polymer | 84 | 9189.6 | 1 | UniProt (P66503) Pfam (PF01649) | Listeria monocytogenes EGD-e | |
| 52 | ZA (4) | 50S ribosomal protein L31 type B | polymer | 81 | 9274.4 | 1 | UniProt (P0A485) Pfam (PF01197) | Listeria monocytogenes EGD-e | |
| 53 | AB, BB (0) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 2 | Chemie (ATP) | |||
| 54 | AC, AD, AE, AF, AG... (A, a, 0, D, b...) | MAGNESIUM ION | non-polymer | 24.3 | 143 | Chemie (MG) | |||
| 55 | GB, IG (A, a) | SPERMIDINE | non-polymer | 145.2 | 2 | Chemie (SPD) | |||
| 56 | EC, GD, JC, JE, KC... (A, P, a) | POTASSIUM ION | non-polymer | 39.1 | 21 | Chemie (K) | |||
| 57 | LH, MH, OH (5, 9, o) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) |
Sequence modifications
0: 1 - 523 (UniProt: Q8Y8I3)
| PDB | External Database | Details |
|---|---|---|
| Gln 104 | Glu 104 | engineered mutation |
| Gln 408 | Glu 408 | engineered mutation |
| Gly 524 | - | expression tag |
| Gly 525 | - | expression tag |
| His 526 | - | expression tag |
| His 527 | - | expression tag |
| His 528 | - | expression tag |
| His 529 | - | expression tag |
| His 530 | - | expression tag |
| His 531 | - | expression tag |
| Ala 532 | - | expression tag |
| Lys 533 | - | expression tag |
| Gly 534 | - | expression tag |
| Gly 535 | - | expression tag |
| Glu 536 | - | expression tag |
| Asn 537 | - | expression tag |
| Leu 538 | - | expression tag |
| Tyr 539 | - | expression tag |
| Phe 540 | - | expression tag |
| Gln 541 | - | expression tag |
| Gly 542 | - | expression tag |
| Val 543 | - | expression tag |
| Ala 544 | - | expression tag |
| Asp 545 | - | expression tag |
| Tyr 546 | - | expression tag |
| Lys 547 | - | expression tag |
| Asp 548 | - | expression tag |
| His 549 | - | expression tag |
| Asp 550 | - | expression tag |
| Gly 551 | - | expression tag |
| Asp 552 | - | expression tag |
| Tyr 553 | - | expression tag |
| Lys 554 | - | expression tag |
| Asp 555 | - | expression tag |
| His 556 | - | expression tag |
| Asp 557 | - | expression tag |
| Ile 558 | - | expression tag |
| Asp 559 | - | expression tag |
| Tyr 560 | - | expression tag |
| Lys 561 | - | expression tag |
| Asp 562 | - | expression tag |
| Asp 563 | - | expression tag |
| Asp 564 | - | expression tag |
| Asp 565 | - | expression tag |
| Lys 566 | - | expression tag |
| Gly 567 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 52 |
| Total formula weight | 2201087.0 | |
| Non-Polymers* | Number of molecules | 171 |
| Total formula weight | 5797.8 | |
| All* | Total formula weight | 2206884.7 |
