7NAF
State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb1-MTD local model
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 25S rRNA | polymer | 378 | 121655.5 | 1 | Saccharomyces cerevisiae BY4741 | ||
| 2 | B (5) | Ribosomal RNA-processing protein 17 | polymer | 105 | 13077.0 | 1 | Pfam (PF09805) UniProt (by SIFTS) (Q04031) | Saccharomyces cerevisiae BY4741 | |
| 3 | C (8) | Nucleolar complex protein 2 | polymer | 39 | 4749.7 | 1 | UniProt (P39744) | Saccharomyces cerevisiae BY4741 | |
| 4 | D (V) | 60S ribosomal protein L23-A | polymer | 134 | 14218.6 | 1 | UniProt (P0CX41) Pfam (PF00238) | Saccharomyces cerevisiae BY4741 | L17a,Large ribosomal subunit protein uL14-A,YL32 |
| 5 | E (u) | Ribosome biogenesis protein RLP24 | polymer | 65 | 7786.3 | 1 | UniProt (Q07915) Pfam (PF01246) | Saccharomyces cerevisiae BY4741 | Ribosomal protein L24-like |
| 6 | F (w) | 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase | polymer | 389 | 45405.6 | 1 | UniProt (P25582) Pfam (PF01728) Pfam (PF11861) | Saccharomyces cerevisiae BY4741 | 2'-O-ribose RNA methyltransferase SPB1,AdoMet-dependent rRNA methyltransferase SPB1,S-adenosyl-L-methionine-dependent methyltransferase,Suppressor of PAB1 protein 1 |
| 7 | G (b) | 60S ribosome biogenesis factor Nog1 | polymer | 74 | 8783.6 | 1 | UniProt (by SIFTS) (Q02892) | Saccharomyces cerevisiae BY4741 | |
| 8 | H (d) | 60S ribosomal protein L31-A | polymer | 60 | 7025.4 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae BY4741 | L34,Large ribosomal subunit protein eL31-A,YL28 |
| 9 | I (U) | 60S ribosomal protein L22-A | polymer | 18 | 2350.9 | 1 | UniProt (by SIFTS) (P05749) | Saccharomyces cerevisiae BY4741 | |
| 10 | J (R) | 60S ribosome ribosomal protein L19A | polymer | 62 | 7490.0 | 1 | Pfam (PF01280) UniProt (by SIFTS) (P0CX82) | Saccharomyces cerevisiae BY4741 | |
| 11 | K (c) | 60S ribosomal protein L30 | polymer | 41 | 4390.1 | 1 | Pfam (PF01248) UniProt (by SIFTS) (P14120) | Saccharomyces cerevisiae BY4741 | |
| 12 | L (B) | 60S ribosomal protein L3 | polymer | 376 | 42452.2 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 13 | M (z) | UPF0642 protein YBL028C | polymer | 6 | 646.8 | 1 | UniProt (P38202) | Saccharomyces cerevisiae BY4741 | |
| 14 | N (s) | Nuclear GTP-binding protein NUG1 | polymer | 7 | 977.2 | 1 | UniProt (P40010) | Saccharomyces cerevisiae BY4741 | Nuclear GTPase 1 |
| 15 | O (y) | Eukaryotic translation initiation factor 6 | polymer | 245 | 26476.6 | 1 | UniProt (Q12522) Pfam (PF01912) | Saccharomyces cerevisiae BY4741 | eIF-6 |
| 16 | P (q) | 25S rRNA (cytosine(2870)-C(5))-methyltransferase | polymer | 36 | 3821.4 | 1 | UniProt (P40991) | Saccharomyces cerevisiae BY4741 | Nucleolar protein 2 |
| 17 | Q (w) | S-ADENOSYL-L-HOMOCYSTEINE | non-polymer | 384.4 | 1 | Chemie (SAH) | |||
| 18 | R (w) | water | water | 18.0 | 2 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 16 |
| Total formula weight | 311306.9 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 384.4 | |
| All* | Total formula weight | 311691.3 |
