7LXJ
Bacillus cereus DNA glycosylase AlkD bound to a duocarmycin SA-adenine nucleobase adduct and DNA containing an abasic site
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | DNA-7-methylguanine glycosylase | polymer | 241 | 28578.0 | 1 | UniProt (C2T7T7) Pfam (PF08713) UniProt (by SIFTS) (Q816E8) In PDB | Bacillus cereus | AlkD |
| 2 | B | DNA (5'-D(*AP*GP*CP*AP*AP*(ORP)P*GP*GP*C)-3') | polymer | 9 | 2656.7 | 1 | synthetic construct | ||
| 3 | C | DNA (5'-D(*TP*GP*CP*CP*TP*TP*TP*GP*C)-3') | polymer | 9 | 2697.8 | 1 | synthetic construct | ||
| 4 | A, B | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
| 5 | B | methyl (8R)-8-{[(4P)-6-amino-3H-purin-3-yl]methyl}-4-hydroxy-6-(5,6,7-trimethoxy-1H-indole-2-carbonyl)-3,6,7,8-tetrahydropyrrolo[3,2-e]indole-2-carboxylate | non-polymer | 612.6 | 1 | Chemie (YNY) | |||
| 6 | water | water | 18.0 | 189 | Chemie (HOH) |
Sequence modifications
A: 1 - 237 (UniProt: C2T7T7)
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Pro -2 | - | expression tag |
| Val -1 | - | expression tag |
| Pro 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 33932.6 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 692.7 | |
| All* | Total formula weight | 34625.3 |
