7LAB
Structure of SARS-CoV-2 S protein in complex with N-terminal domain antibody DH1052
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, I (X, S, L) | DH1052 light chain | polymer | 199 | 21697.9 | 3 | Homo sapiens (Human) | ||
| 2 | B, D, H (Y, T, H) | DH1052 heavy chain | polymer | 227 | 24086.8 | 3 | Homo sapiens (Human) | ||
| 3 | E, F, G (A, B, C) | Spike glycoprotein | polymer | 1121 | 124124.5 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
| 4 | J, K, L, M, N... (D, E, F, G, I...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 14 | In PDB GlyTouCan (G42666HT) | |||
| 5 | AA, AB, BA, BB, CA... (A, C, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 31 | Chemie (NAG) |
Sequence modifications
A, B, C: 27 - 1147 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 509727.7 | |
| Branched | Number of molecules | 14 |
| Total formula weight | 5941.6 | |
| Non-Polymers* | Number of molecules | 31 |
| Total formula weight | 6857.4 | |
| All* | Total formula weight | 522526.8 |
