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7KPU

Crystal structure of human NatD (NAA40) bound to a bisubstrate analogue with a C-3 linker

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(D, A)
N-alpha-acetyltransferase 40polymer20423697.92UniProt (Q86UY6)
Pfam (PF00583)
Homo sapiens (Human)N-acetyltransferase 11,N-alpha-acetyltransferase D,hNatD,Protein acetyltransferase 1
2B, D
(E, B)
bisubstrate analogue (CMC-ACE-SER-GLY-ARG-GLY-LYS)polymer5505.62Homo sapiens
3E, F, K, M, N
(D, A)
SULFATE IONnon-polymer96.15Chemie (SO4)
4G
(D)
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOLnon-polymer209.21Chemie (BTB)
5H, Q
(E, B)
[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)-3-hydroxy-2,2-dimethyl-4-[(3-{[2-(methylsulfanyl)ethyl]amino}-3-oxopropyl)amino]-4-oxobutyl dihydrogen diphosphate (non-preferred name)non-polymer781.62Chemie (WZG)
6I, R
(E, B)
AMINO GROUPnon-polymer16.02Chemie (NH2)
7J, S
(E, B)
ACETYL GROUPnon-polymer44.12Chemie (ACE)
8L, O, P
(A)
GLYCEROLnon-polymer92.13Chemie (GOL)
9T, U, V, W
(D, E, A, B)
waterwater18.0422Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight48406.9
Non-Polymers*Number of molecules15
Total formula weight2649.1
All*Total formula weight51056.0
*Water molecules are not included.

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PDB entries from 2025-12-17

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