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7KDX

Crystal structure of Streptomyces tokunonesis TokK with hydroxycobalamin, 5'-deoxyadenosine, and methionine

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Methyltransferase TokKpolymer68177458.62UniProt (A0A6B9HEI0)
Pfam (PF02310)
Streptomyces tokunonensis
2C, Q
(A, B)
IRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
3D, R
(A, B)
5'-DEOXYADENOSINEnon-polymer251.22Chemie (5AD)
4E, P
(A, B)
COBALAMINnon-polymer1330.42Chemie (B12)
5F, S
(A, B)
METHIONINEnon-polymer149.22Chemie (MET)
6AA, BA, CA, DA, EA...
(B, A)
1,2-ETHANEDIOLnon-polymer62.121Chemie (EDO)
7IA, N
(B, A)
POTASSIUM IONnon-polymer39.12Chemie (K)
8GA, HA
(B)
CHLORIDE IONnon-polymer35.52Chemie (CL)
9JA, KA
(A, B)
waterwater18.0887Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight154917.3
Non-Polymers*Number of molecules33
Total formula weight5617.4
All*Total formula weight160534.7
*Water molecules are not included.

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PDB entries from 2025-06-18

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