7DUJ

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	30S Ribosomal RNA rRNA	polymer	1522	494169.8	1		Thermus thermophilus HB8
2	B	30S ribosomal protein S2	polymer	256	29317.7	1	UniProt (P80371) Pfam (PF00318) In PDB	Thermus thermophilus HB8
3	C	30S ribosomal protein S3	polymer	239	26751.1	1	UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB	Thermus thermophilus HB8
4	D	30S ribosomal protein S4	polymer	209	24373.4	1	UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB	Thermus thermophilus HB8
5	E	30S ribosomal protein S5	polymer	162	17583.4	1	UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB	Thermus thermophilus HB8
6	F	30S ribosomal protein S6	polymer	101	11988.8	1	UniProt (Q5SLP8) Pfam (PF01250) In PDB	Thermus thermophilus HB8	TS9
7	G	30S ribosomal protein S7	polymer	156	18051.0	1	UniProt (P17291) Pfam (PF00177) In PDB	Thermus thermophilus HB8
8	H	30S ribosomal protein S8	polymer	138	15868.6	1	UniProt (P0DOY9) Pfam (PF00410) In PDB	Thermus thermophilus HB8
9	I	30S ribosomal protein S9	polymer	128	14410.6	1	UniProt (P80374) Pfam (PF00380) In PDB	Thermus thermophilus HB8
10	J	30S ribosomal protein S10	polymer	105	11955.0	1	UniProt (Q5SHN7) Pfam (PF00338) In PDB	Thermus thermophilus HB8
11	K	30S ribosomal protein S11	polymer	129	13737.9	1	UniProt (P80376) Pfam (PF00411) In PDB	Thermus thermophilus HB8
12	L	30S ribosomal protein S12	polymer	135	14966.8	1	UniProt (A0A3P4AU90) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) In PDB	Thermus thermophilus HB8
13	M	30S ribosomal protein S13	polymer	126	14338.9	1	UniProt (P80377) Pfam (PF00416) In PDB	Thermus thermophilus HB8
14	N	30S ribosomal protein S14 type Z	polymer	61	7158.7	1	UniProt (P0DOY6) Pfam (PF00253) In PDB	Thermus thermophilus HB8
15	O	30S ribosomal protein S15	polymer	89	10578.4	1	UniProt (Q5SJ76) Pfam (PF00312) In PDB	Thermus thermophilus HB8
16	P	30S ribosomal protein S16	polymer	88	10410.0	1	UniProt (Q5SJH3) Pfam (PF00886) In PDB	Thermus thermophilus HB8
17	Q	30S ribosomal protein S17	polymer	105	12324.7	1	UniProt (P24321) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) In PDB	Thermus thermophilus HB8
18	R	30S ribosomal protein S18	polymer	88	10258.3	1	UniProt (Q5SLQ0) Pfam (PF01084) In PDB	Thermus thermophilus HB8
19	S	30S ribosomal protein S19	polymer	93	10605.5	1	UniProt (Q5SHP2) Pfam (PF00203) In PDB	Thermus thermophilus HB8
20	T	30S ribosomal protein S20	polymer	106	11736.1	1	UniProt (P80380) Pfam (PF01649) In PDB	Thermus thermophilus HB8
21	U	30S ribosomal protein Thx	polymer	27	3350.0	1	UniProt (Q5SIH3) Pfam (PF17070) In PDB	Thermus thermophilus HB8	S31
22	Y	RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')	polymer	6	1792.0	1		Thermus thermophilus
23	W	RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')	polymer	15	4815.9	1		Thermus thermophilus
24	A, C, D, E, F...	MAGNESIUM ION	non-polymer		24.3	249	Chemie (MG)
25	A	(1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside	non-polymer		447.5	1	Chemie (SIS)
26	D, N	ZINC ION	non-polymer		65.4	2	Chemie (ZN)
27		water	water		18.0	239	Chemie (HOH)

Contents of the asymmetric unit

Polymers	Number of chains	23
	Total formula weight	790542.6
Non-Polymers*	Number of molecules	252
	Total formula weight	6630.3
All*	Total formula weight	797172.9

*Water molecules are not included.