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7DKF

Activity optimized supercomplex state4

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, L
(A1, M1)
Cytochrome b-c1 complex subunit 1, mitochondrialpolymer48052796.42UniProt (P31800)
Pfam (PF00675)
Pfam (PF05193)
Bos taurus (Bovine)Complex III subunit 1,Core protein I,Ubiquinol-cytochrome-c reductase complex core protein 1
2B, M
(B1, N1)
Cytochrome b-c1 complex subunit 2, mitochondrialpolymer45348203.42UniProt (P23004)
Pfam (PF00675)
Pfam (PF05193)
Bos taurus (Bovine)Complex III subunit 2,Core protein II,Ubiquinol-cytochrome-c reductase complex core protein 2
3C, N
(C1, O1)
Cytochrome bpolymer37942620.32UniProt (P00157)
Pfam (PF00033)
Pfam (PF00032)
Bos taurus (Bovine)Complex III subunit 3,Complex III subunit III,Cytochrome b-c1 complex subunit 3,Ubiquinol-cytochrome-c reductase complex cytochrome b subunit
4D, O
(D1, P1)
Cytochrome c1, heme protein, mitochondrialpolymer32535343.82UniProt (P00125)
Pfam (PF02167)
Bos taurus (Bovine)Complex III subunit 4,Complex III subunit IV,Cytochrome b-c1 complex subunit 4,Ubiquinol-cytochrome-c reductase complex cytochrome c1 subunit,Cytochrome c-1
5E, P
(E1, Q1)
Cytochrome b-c1 complex subunit Rieske, mitochondrialpolymer19621640.62UniProt (P13272)
Pfam (PF02921)
Pfam (PF00355)
Bos taurus (Bovine)Complex III subunit 5,Cytochrome b-c1 complex subunit 5,Rieske iron-sulfur protein,RISP,Rieske protein UQCRFS1,Ubiquinol-cytochrome c reductase iron-sulfur subunit
6F, Q
(F1, R1)
Cytochrome b-c1 complex subunit 7polymer11113501.42UniProt (P00129)
Pfam (PF02271)
Bos taurus (Bovine)Complex III subunit 7,Complex III subunit VII,QP-C,Ubiquinol-cytochrome c reductase complex 14 kDa protein
7G, R
(G1, S1)
Cytochrome b-c1 complex subunit 8polymer829737.22UniProt (P13271)
Pfam (PF02939)
Bos taurus (Bovine)Complex III subunit 8,Complex III subunit VIII,Ubiquinol-cytochrome c reductase complex 9.5 kDa protein,Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C
8H, S
(H1, T1)
Cytochrome b-c1 complex subunit 6, mitochondrialpolymer9110638.72UniProt (P00126)
Pfam (PF02320)
Bos taurus (Bovine)Complex III subunit 6,Complex III subunit VIII,Cytochrome c1 non-heme 11 kDa protein,Mitochondrial hinge protein,Ubiquinol-cytochrome c reductase complex 11 kDa protein
9I, T
(I1, U1)
Cytochrome b-c1 complex subunit 9polymer787964.32UniProt (P13272)
Pfam (PF09165)
Bos taurus (Bovine)Complex III subunit 5,Cytochrome b-c1 complex subunit 5,Rieske iron-sulfur protein,RISP,Rieske protein UQCRFS1,Ubiquinol-cytochrome c reductase iron-sulfur subunit
10J, U
(J1, V1)
Cytochrome b-c1 complex subunit 9polymer647469.62UniProt (P00130)
Pfam (PF05365)
Bos taurus (Bovine)Complex III subunit 9,Complex III subunit X,Cytochrome c1 non-heme 7 kDa protein,Ubiquinol-cytochrome c reductase complex 7.2 kDa protein
11K, V
(K1, W1)
Cytochrome b-c1 complex subunit 10polymer566527.62UniProt (P07552)
Pfam (PF08997)
Bos taurus (Bovine)Complex III subunit 10,Complex III subunit XI,Ubiquinol-cytochrome c reductase complex 6.4 kDa protein
12W
(22)
NADH-ubiquinone oxidoreductase chain 2polymer34739274.91UniProt (P03892)
Pfam (PF00361)
Pfam (PF06444)
Bos taurus (Bovine)NADH dehydrogenase subunit 2
13X
(32)
NADH-ubiquinone oxidoreductase chain 3polymer11513058.51UniProt (P03898)
Pfam (PF00507)
Bos taurus (Bovine)NADH dehydrogenase subunit 3
14Y
(42)
NADH-ubiquinone oxidoreductase chain 4polymer45952130.81UniProt (P03910)
Pfam (PF01059)
Pfam (PF00361)
Bos taurus (Bovine)NADH dehydrogenase subunit 4
15Z
(52)
NADH-ubiquinone oxidoreductase chain 4Lpolymer9810800.21UniProt (P03902)
Pfam (PF00420)
Bos taurus (Bovine)NADH dehydrogenase subunit 4L
16AA
(72)
NADH-ubiquinone oxidoreductase chain 6polymer17519082.51UniProt (P03924)
Pfam (PF00499)
Bos taurus (Bovine)NADH dehydrogenase subunit 6
17BA
(82)
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialpolymer44448562.11UniProt (P25708)
Pfam (PF01512)
Pfam (PF22461)
Pfam (PF10589)
Bos taurus (Bovine)Complex I-51kD,CI-51kD,NADH dehydrogenase flavoprotein 1,NADH-ubiquinone oxidoreductase 51 kDa subunit
18CA
(92)
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrialpolymer21723840.41UniProt (P04394)
Pfam (PF01257)
Bos taurus (Bovine)NADH dehydrogenase subunit II,NADH-ubiquinone oxidoreductase 24 kDa subunit
19DA
(A2)
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrialpolymer70477044.11UniProt (P15690)
Pfam (PF00111)
Pfam (PF10588)
Pfam (PF22117)
Pfam (PF22151)
Pfam (PF00384)
Pfam (PF09326)
Bos taurus (Bovine)Complex I-75kD,CI-75kD
20EA
(B2)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrialpolymer43049207.31UniProt (P17694)
Pfam (PF00346)
Bos taurus (Bovine)Complex I-49kD,CI-49kD,NADH-ubiquinone oxidoreductase 49 kDa subunit
21FA
(C2)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrialpolymer22826464.81UniProt (P23709)
Pfam (PF00329)
Bos taurus (Bovine)Complex I-30kD,CI-30kD,NADH-ubiquinone oxidoreductase 30 kDa subunit
22GA
(D2)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrialpolymer17920104.51UniProt (P42026)
Pfam (PF01058)
Bos taurus (Bovine)Complex I-20kD,CI-20kD,NADH-ubiquinone oxidoreductase 20 kDa subunit,PSST subunit
23HA
(E2)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrialpolymer17620219.91UniProt (P42028)
Pfam (PF12838)
Bos taurus (Bovine)Complex I-23kD,CI-23kD,NADH-ubiquinone oxidoreductase 23 kDa subunit,TYKY subunit
24IA
(F2)
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrialpolymer758451.41UniProt (P25712)
Pfam (PF15880)
Bos taurus (Bovine)Complex I-9kD,CI-9kD,NADH-ubiquinone oxidoreductase 9 kDa subunit
25JA
(G2)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrialpolymer13315361.31UniProt (Q02375)
Pfam (PF04800)
Bos taurus (Bovine)Complex I-18 kDa,CI-18 kDa,Complex I-AQDQ,CI-AQDQ,NADH-ubiquinone oxidoreductase 18 kDa subunit
26KA
(H2)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5polymer10512563.51UniProt (Q02379)
Pfam (PF10200)
Bos taurus (Bovine)Complex I-15 kDa,CI-15 kDa,NADH-ubiquinone oxidoreductase 15 kDa subunit
27LA
(I2)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialpolymer9610551.71UniProt (P23934)
Pfam (PF10276)
Bos taurus (Bovine)Complex I-13kD-A,CI-13kD-A,NADH-ubiquinone oxidoreductase 13 kDa-A subunit
28MA
(J2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1polymer708117.41UniProt (Q02377)
Pfam (PF15879)
Bos taurus (Bovine)Complex I-MWFE,CI-MWFE,NADH-ubiquinone oxidoreductase MWFE subunit
29NA
(K2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2polymer9810966.61UniProt (Q02370)
Pfam (PF05047)
Bos taurus (Bovine)Complex I-B8,CI-B8,NADH-ubiquinone oxidoreductase B8 subunit
30OA
(L2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3polymer839226.71UniProt (Q02371)
Pfam (PF14987)
Bos taurus (Bovine)Complex I-B9,CI-B9,NADH-ubiquinone oxidoreductase B9 subunit
31PA
(N2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5polymer11513203.41UniProt (P23935)
Pfam (PF04716)
Bos taurus (Bovine)Complex I subunit B13,Complex I-13kD-B,CI-13kD-B,NADH-ubiquinone oxidoreductase 13 kDa-B subunit
32QA
(O2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6polymer12714952.31UniProt (Q02366)
Pfam (PF13233)
Bos taurus (Bovine)Complex I-B14,CI-B14,NADH-ubiquinone oxidoreductase B14 subunit
33RA
(P2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7polymer11212564.41UniProt (Q05752)
Pfam (PF07347)
Bos taurus (Bovine)Complex I-B14.5a,CI-B14.5a,NADH-ubiquinone oxidoreductase subunit B14.5a
34SA
(Q2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8polymer17119992.91UniProt (P42029)
Pfam (PF06747)
Bos taurus (Bovine)Complex I-19kD,CI-19kD,Complex I-PGIV,CI-PGIV,NADH-ubiquinone oxidoreductase 19 kDa subunit
35TA
(R2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrialpolymer34539174.01UniProt (P34943)
Pfam (PF01370)
Bos taurus (Bovine)Complex I-39kD,CI-39kD,NADH-ubiquinone oxidoreductase 39 kDa subunit
36UA
(S2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrialpolymer32036739.71UniProt (P34942)
Pfam (PF01712)
Bos taurus (Bovine)Complex I-42kD,CI-42kD,NADH-ubiquinone oxidoreductase 42 kDa subunit
37VA
(T2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11polymer14014640.81UniProt (Q8HXG6)
Pfam (PF02466)
Bos taurus (Bovine)Complex I-B14.7,CI-B14.7,NADH-ubiquinone oxidoreductase subunit B14.7
38WA
(U2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12polymer14517115.51UniProt (O97725)
Pfam (PF05071)
Bos taurus (Bovine)Complex I-B17.2,CIB17.2,NADH-ubiquinone oxidoreductase subunit B17.2
39XA
(V2)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13polymer14316563.21UniProt (Q95KV7)
Pfam (PF06212)
Bos taurus (Bovine)Cell death regulatory protein GRIM-19,Complex I-B16.6,CI-B16.6,Gene associated with retinoic-interferon-induced mortality 19 protein,GRIM-19,NADH-ubiquinone oxidoreductase B16.6 subunit
40OB, YA
(W2, M2)
Acyl carrier protein, mitochondrialpolymer8810119.52UniProt (P52505)
Pfam (PF00550)
Bos taurus (Bovine)ACP,CI-SDAP,NADH-ubiquinone oxidoreductase 9.6 kDa subunit
41ZA
(X2)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1polymer576978.11UniProt (Q02378)
Pfam (PF08040)
Bos taurus (Bovine)Complex I-MNLL,CI-MNLL,NADH-ubiquinone oxidoreductase MNLL subunit
42AB
(Y2)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrialpolymer728500.31UniProt (Q02374)
Pfam (PF14813)
Bos taurus (Bovine)Complex I-AGGG,CI-AGGG,NADH-ubiquinone oxidoreductase AGGG subunit
43BB
(Z2)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3polymer9711029.51UniProt (Q02365)
Pfam (PF08122)
Bos taurus (Bovine)Complex I-B12,CI-B12,NADH-ubiquinone oxidoreductase B12 subunit
44CB
(a2)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4polymer12815075.11UniProt (P48305)
Pfam (PF07225)
Bos taurus (Bovine)Complex I-B15,CI-B15,NADH-ubiquinone oxidoreductase B15 subunit
45DB
(b2)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrialpolymer14316752.41UniProt (Q02380)
Pfam (PF09781)
Bos taurus (Bovine)Complex I-SGDH,CI-SGDH,NADH-ubiquinone oxidoreductase SGDH subunit
46EB
(c2)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6polymer12715418.91UniProt (Q02367)
Pfam (PF09782)
Bos taurus (Bovine)Complex I-B17,CI-B17,NADH-ubiquinone oxidoreductase B17 subunit
47FB
(d2)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7polymer13616297.61UniProt (Q02368)
Pfam (PF05676)
Bos taurus (Bovine)Complex I-B18,CI-B18,NADH-ubiquinone oxidoreductase B18 subunit
48GB
(f2)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9polymer17821696.71UniProt (Q02369)
Pfam (PF05347)
Bos taurus (Bovine)Complex I-B22,CI-B22,NADH-ubiquinone oxidoreductase B22 subunit
49HB
(h2)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrialpolymer12514469.11UniProt (Q8HXG5)
Pfam (PF10183)
Bos taurus (Bovine)Complex I-ESSS,CI-ESSS,NADH-ubiquinone oxidoreductase ESSS subunit
50IB
(i2)
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrialpolymer495836.71UniProt (Q02376)
Pfam (PF15088)
Bos taurus (Bovine)Complex I-KFYI,CI-KFYI,NADH-ubiquinone oxidoreductase KFYI subunit
51JB
(j2)
NADH dehydrogenase [ubiquinone] 1 subunit C2polymer12014117.31UniProt (Q02827)
Pfam (PF06374)
Bos taurus (Bovine)Complex I-B14.5b,CI-B14.5b,NADH-ubiquinone oxidoreductase subunit B14.5b
52KB
(12)
NADH-ubiquinone oxidoreductase chain 1polymer31835688.81UniProt (P03887)
Pfam (PF00146)
Bos taurus (Bovine)NADH dehydrogenase subunit 1
53LB
(62)
NADH-ubiquinone oxidoreductase chain 5polymer60668327.91UniProt (P03920)
Pfam (PF06455)
Pfam (PF00662)
Pfam (PF00361)
Bos taurus (Bovine)NADH dehydrogenase subunit 5
54MB
(g2)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10polymer17621000.91UniProt (Q02373)
Pfam (PF10249)
Bos taurus (Bovine)Complex I-PDSW,CI-PDSW,NADH-ubiquinone oxidoreductase PDSW subunit
55NB
(e2)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrialpolymer15818758.01UniProt (Q02372)
Pfam (PF05821)
Bos taurus (Bovine)Complex I-ASHI,CI-ASHI,NADH-ubiquinone oxidoreductase ASHI subunit
56PB
(A3)
Cytochrome c oxidase subunit 1polymer51457065.81UniProt (P00396)
Pfam (PF00115)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide I
57QB
(B3)
Cytochrome c oxidase subunit 2polymer22726040.41UniProt (P68530)
Pfam (PF02790)
Pfam (PF00116)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide II
58RB
(C3)
Cytochrome c oxidase subunit 3polymer26129957.61UniProt (P00415)
Pfam (PF00510)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide III
59SB
(D3)
Cytochrome c oxidase subunit 4 isoform 1, mitochondrialpolymer16919602.61UniProt (P00423)
Pfam (PF02936)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide IV,Cytochrome c oxidase subunit IV isoform 1,COX IV-1
60TB
(E3)
Cytochrome c oxidase subunit 5A, mitochondrialpolymer15216758.21UniProt (P00426)
Pfam (PF02284)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide Va
61UB
(F3)
Cytochrome c oxidase subunit 5B, mitochondrialpolymer12913852.81UniProt (P00428)
Pfam (PF01215)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIa,Cytochrome c oxidase polypeptide Vb
62VB
(G3)
Cytochrome c oxidase subunit 6A2, mitochondrialpolymer9710819.41UniProt (P07471)
Pfam (PF02046)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIa-heart,COXVIAH,Cytochrome c oxidase polypeptide VIb
63WB
(H3)
Cytochrome c oxidase subunit 6B1polymer8610170.41UniProt (P00429)
Pfam (PF02297)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VII,Cytochrome c oxidase subunit AED,Cytochrome c oxidase subunit VIb isoform 1,COX VIb-1
64XB
(I3)
Cytochrome c oxidase subunit 6Cpolymer748626.21UniProt (P04038)
Pfam (PF02937)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIc,Cytochrome c oxidase subunit STA
65YB
(J3)
Cytochrome c oxidase subunit 7A1, mitochondrialpolymer809076.51UniProt (P07470)
Pfam (PF02238)
Bos taurus (Bovine)Cytochrome c oxidase subunit VIIIc,VIIIC,Cytochrome c oxidase subunit VIIa-heart,Cytochrome c oxidase subunit VIIa-H,Cytochrome c oxidase subunit VIIa-muscle,Cytochrome c oxidase subunit VIIa-M
66ZB
(K3)
Cytochrome c oxidase subunit 7B, mitochondrialpolymer809077.41UniProt (P13183)
Pfam (PF05392)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIIb,IHQ
67AC
(L3)
Cytochrome c oxidase subunit 7C, mitochondrialpolymer637342.71UniProt (P00430)
Pfam (PF02935)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIIIA,Cytochrome c oxidase polypeptide VIIc
68BC
(M3)
Cytochrome c oxidase subunit 8B, mitochondrialpolymer707650.11UniProt (P10175)
Pfam (PF02285)
Bos taurus (Bovine)Cytochrome c oxidase polypeptide VIII-heart,Cytochrome c oxidase subunit 8-1,Cytochrome c oxidase subunit 8H,IX,VIIIb
69CC, DC, FC, GC
(C1, O1)
PROTOPORPHYRIN IX CONTAINING FEnon-polymer616.54Chemie (HEM)
70EC, HC
(D1, P1)
HEME Cnon-polymer618.52Chemie (HEC)
71IC, OC, RC
(Q1, 92, A2)
FE2/S2 (INORGANIC) CLUSTERnon-polymer175.83Chemie (FES)
72JC, LC, SC
(22, 42, B2)
1,2-Distearoyl-sn-glycerophosphoethanolaminenon-polymer748.13Chemie (3PE)
73KC
(42)
CARDIOLIPINnon-polymer1464.01Chemie (CDL)
74MC
(82)
FLAVIN MONONUCLEOTIDEnon-polymer456.31Chemie (FMN)
75NC, PC, QC, TC, UC...
(82, A2, D2, E2)
IRON/SULFUR CLUSTERnon-polymer351.66Chemie (SF4)
76GD, WC
(F3, I2)
ZINC IONnon-polymer65.42Chemie (ZN)
77XC
(R2)
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATEnon-polymer743.41Chemie (NAP)
78YC, ZC
(S2, j2)
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINEnon-polymer790.12Chemie (PC1)
79AD, BD
(A3)
HEME-Anon-polymer852.82Chemie (HEA)
80CD, ED, FD
(A3, B3)
COPPER (II) IONnon-polymer63.53Chemie (CU)
81DD
(A3)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains80
Total formula weight1709088.2
Non-Polymers*Number of molecules31
Total formula weight14880.0
All*Total formula weight1723968.1
*Water molecules are not included.

237992

PDB entries from 2025-06-25

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