7CJB
VHL recognizes hydroxyproline in RIPK1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E, I, M | von Hippel-Lindau disease tumor suppressor | polymer | 163 | 18725.3 | 4 | UniProt (P40337) Pfam (PF01847) Pfam (PF17211) In PDB | Homo sapiens (Human) | Protein G7,pVHL |
2 | B, F, J, N | Elongin-B | polymer | 122 | 13397.9 | 4 | UniProt (Q15370) Pfam (PF00240) In PDB | Homo sapiens (Human) | EloB,Elongin 18 kDa subunit,RNA polymerase II transcription factor SIII subunit B,SIII p18,Transcription elongation factor B polypeptide 2 |
3 | C, G, K, O | Elongin-C | polymer | 100 | 11141.7 | 4 | Pfam (PF03931) UniProt (by SIFTS) (Q15369) In PDB | Homo sapiens (Human) | |
4 | D, H, L, P | THR-LEU-TYR-TYR-MET-ALA-PRO-GLU-HIS-LEU-ASN-ASP-VAL-ASN-ALA | polymer | 15 | 1767.9 | 4 | UniProt (Q13546) In PDB | Homo sapiens | 15-mer peptide from Receptor-interacting serine/threonine-protein kinase 1 |
5 | E, I | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) |
Sequence modifications
A, E, I, M: 55 - 213 (UniProt: P40337)
B, F, J, N: 1 - 118 (UniProt: Q15370)
PDB | External Database | Details |
---|---|---|
Gly 51 | - | expression tag |
Pro 52 | - | expression tag |
Gly 53 | - | expression tag |
Ser 54 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Pro -2 | - | expression tag |
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
Ala 60 | Cys 60 | conflict |
Ser 89 | Cys 89 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 16 |
Total formula weight | 180131.4 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 184.2 | |
All* | Total formula weight | 180315.6 |