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7C7A

Cryo-EM structure of yeast Ribonuclease MRP with substrate ITS1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Ribonuclease MRP RNA subunit NME1polymer340108806.71Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
2B
(B)
Ribonucleases P/MRP protein subunit POP1polymer875100559.61UniProt (P41812)
Pfam (PF06978)
Pfam (PF08170)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP1,RNases P/MRP 100.4 kDa subunit
3C
(C)
Ribonucleases P/MRP protein subunit POP3polymer19522643.71UniProt (P53833)
Pfam (PF08228)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP3,RNases MRP/P 22.6 kDa subunit
4D
(D)
RNases MRP/P 32.9 kDa subunitpolymer27932933.21UniProt (P38336)
Pfam (PF01868)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP4
5E
(E)
Ribonuclease P/MRP protein subunit POP5polymer17319601.61UniProt (P28005)
Pfam (PF01900)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP5,RNase P/MRP 19.6 kDa subunit
6F
(F)
Ribonucleases P/MRP protein subunit POP6polymer15818235.01UniProt (P53218)
Pfam (PF01918)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP6,RNases P/MRP 18.2 kDa subunit
7G
(G)
Ribonucleases P/MRP protein subunit POP7polymer14015844.31UniProt (P38291)
Pfam (PF12328)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP7,RNases P/MRP 15.8 kDa subunit
8H
(H)
Ribonucleases P/MRP protein subunit POP8polymer13315530.41UniProt (P38208)
Pfam (PF20976)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP8,RNases P/MRP 15.5 kDa subunit
9I, J
(I, J)
Ribonuclease P/MRP protein subunit RPP1polymer29332270.32UniProt (P38786)
Pfam (PF01876)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein RPP1,RNaseP/MRP 32.2 kDa subunit
10K
(K)
Ribonuclease MRP protein subunit SNM1polymer19822579.01UniProt (P40993)
Pfam (PF04032)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein SNM1,RNase MRP 22.5 kDa subunit
11L
(L)
Ribonuclease MRP protein subunit RMP1polymer20123657.71UniProt (Q12530)
Pfam (PF20945)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein RMP1,RNase MRP 23.6 kDa subunit
12M
(R)
Internal Transcribed Spacer 1polymer216633.01Saccharomyces cerevisiae
13N, O, Q
(A, R)
MAGNESIUM IONnon-polymer24.33Chemie (MG)
14P
(K)
ZINC IONnon-polymer65.41Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains13
Total formula weight451564.5
Non-Polymers*Number of molecules4
Total formula weight138.3
All*Total formula weight451702.8
*Water molecules are not included.

237992

PDB entries from 2025-06-25

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