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7C7A

Cryo-EM structure of yeast Ribonuclease MRP with substrate ITS1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ARibonuclease MRP RNA subunit NME1polymer340108806.71Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
2BRibonucleases P/MRP protein subunit POP1polymer875100559.61UniProt (P41812)
Pfam (PF06978)
Pfam (PF08170)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP1,RNases P/MRP 100.4 kDa subunit
3CRibonucleases P/MRP protein subunit POP3polymer19522643.71UniProt (P53833)
Pfam (PF08228)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP3,RNases MRP/P 22.6 kDa subunit
4DRNases MRP/P 32.9 kDa subunitpolymer27932933.21UniProt (P38336)
Pfam (PF01868)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP4
5ERibonuclease P/MRP protein subunit POP5polymer17319601.61UniProt (P28005)
Pfam (PF01900)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP5,RNase P/MRP 19.6 kDa subunit
6FRibonucleases P/MRP protein subunit POP6polymer15818235.01UniProt (P53218)
Pfam (PF01918)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP6,RNases P/MRP 18.2 kDa subunit
7GRibonucleases P/MRP protein subunit POP7polymer14015844.31UniProt (P38291)
Pfam (PF12328)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP7,RNases P/MRP 15.8 kDa subunit
8HRibonucleases P/MRP protein subunit POP8polymer13315530.41UniProt (P38208)
Pfam (PF20976)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein POP8,RNases P/MRP 15.5 kDa subunit
9I, JRibonuclease P/MRP protein subunit RPP1polymer29332270.32UniProt (P38786)
Pfam (PF01876)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein RPP1,RNaseP/MRP 32.2 kDa subunit
10KRibonuclease MRP protein subunit SNM1polymer19822579.01UniProt (P40993)
Pfam (PF04032)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein SNM1,RNase MRP 22.5 kDa subunit
11LRibonuclease MRP protein subunit RMP1polymer20123657.71UniProt (Q12530)
Pfam (PF20945)
In PDB
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RNA-processing protein RMP1,RNase MRP 23.6 kDa subunit
12RInternal Transcribed Spacer 1polymer216633.01Saccharomyces cerevisiae
13A, RMAGNESIUM IONnon-polymer24.33Chemie (MG)
14KZINC IONnon-polymer65.41Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains13
Total formula weight451564.5
Non-Polymers*Number of molecules4
Total formula weight138.3
All*Total formula weight451702.8
*Water molecules are not included.

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PDB entries from 2024-07-10

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