7BV2
The nsp12-nsp7-nsp8 complex bound to the template-primer RNA and triphosphate form of Remdesivir(RTP)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | RNA-directed RNA polymerase | polymer | 951 | 109070.4 | 1 | UniProt (P0DTD1) Pfam (PF06478) Pfam (PF00680) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | pp1ab,ORF1ab polyprotein,Pol,RdRp,Non-structural protein 12,nsp12 |
2 | B | Non-structural protein 8 | polymer | 207 | 23139.4 | 1 | UniProt (P0DTD1) Pfam (PF08717) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | pp1ab,ORF1ab polyprotein,nsp8 |
3 | C | Non-structural protein 7 | polymer | 92 | 10485.2 | 1 | UniProt (P0DTD1) Pfam (PF08716) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | pp1ab,ORF1ab polyprotein,nsp7 |
4 | P | Primer | polymer | 20 | 6410.8 | 1 | Severe acute respiratory syndrome coronavirus 2 | ||
5 | T | Templete | polymer | 30 | 9358.5 | 1 | Severe acute respiratory syndrome coronavirus 2 | ||
6 | A | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
7 | A | PYROPHOSPHATE 2- | non-polymer | 176.0 | 1 | Chemie (POP) | |||
8 | A | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
9 | P | [(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate | non-polymer | 371.2 | 1 | Chemie (F86) | |||
10 | water | water | 18.0 | 5 | Chemie (HOH) |
Sequence modifications
A: 1 - 932 (UniProt: P0DTD1)
B: 1 - 198 (UniProt: P0DTD1)
C: 1 - 83 (UniProt: P0DTD1)
PDB | External Database | Details |
---|---|---|
Met 0 | - | initiating methionine |
Gly 933 | - | expression tag |
Gly 934 | - | expression tag |
Ser 935 | - | expression tag |
Glu 936 | - | expression tag |
Asn 937 | - | expression tag |
Leu 938 | - | expression tag |
Tyr 939 | - | expression tag |
Phe 940 | - | expression tag |
Gln 941 | - | expression tag |
Gly 942 | - | expression tag |
His 943 | - | expression tag |
His 944 | - | expression tag |
His 945 | - | expression tag |
His 946 | - | expression tag |
His 947 | - | expression tag |
His 948 | - | expression tag |
His 949 | - | expression tag |
His 950 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met 0 | - | initiating methionine |
His 199 | - | expression tag |
His 200 | - | expression tag |
His 201 | - | expression tag |
His 202 | - | expression tag |
His 203 | - | expression tag |
His 204 | - | expression tag |
His 205 | - | expression tag |
His 206 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met 0 | - | initiating methionine |
His 84 | - | expression tag |
His 85 | - | expression tag |
His 86 | - | expression tag |
His 87 | - | expression tag |
His 88 | - | expression tag |
His 89 | - | expression tag |
His 90 | - | expression tag |
His 91 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 158464.3 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 726.6 | |
All* | Total formula weight | 159190.9 |