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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7BHP

Cryo-EM structure of the human Ebp1 - 80S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1L528S ribosomal RNApolymer50701640182.01GenBank (86475748)Homo sapiens
2L75S ribosomal RNApolymer12038691.91GenBank (23898)Homo sapiens
3L85.8S ribosomal RNApolymer15650143.61GenBank (555853)Homo sapiens
4LA60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein uL2
5LB60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
In PDB		Homo sapiens (Human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
6LC60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Homo sapiens (Human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
7LD60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein uL18
8LE60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF01159)
Pfam (PF03868)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
9LF60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein uL30
10LG60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
11LH60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein uL6
12LI60S ribosomal protein L10-likepolymer21424570.91UniProt (Q96L21)
Pfam (PF00252)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein uL16-like
13LJ60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Homo sapiens (Human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
14LL60S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
In PDB		Homo sapiens (Human)Breast basic conserved protein 1,Large ribosomal subunit protein eL13
15LM60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
In PDB		Homo sapiens (Human)CAG-ISL 7,Large ribosomal subunit protein eL14
16LN60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL15
17LO60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
In PDB		Homo sapiens (Human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
18LP60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
In PDB		Homo sapiens (Human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
19LQ60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL18
20LR60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL19
21LS60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL20
22LT60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL21
23LU60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
In PDB		Homo sapiens (Human)EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15,Large ribosomal subunit protein eL22
24LW60S ribosomal protein L24polymer15717825.11UniProt (P83731)
Pfam (PF01246)
In PDB		Homo sapiens (Human)60S ribosomal protein L30,Large ribosomal subunit protein eL24
25LX60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein uL23
26LY60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein uL24
27LZ60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL27
28La60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein uL15
29Lb60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
In PDB		Homo sapiens (Human)Cell surface heparin-binding protein HIP,Large ribosomal subunit protein eL29
30Lc60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL30
31Ld60S ribosomal protein L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL31
32Le60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL32
33Lf60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
In PDB		Homo sapiens (Human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
34Lg60S ribosomal protein L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL34
35Lh60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein uL29
36Li60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL36
37Lj60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
In PDB		Homo sapiens (Human)G1.16,Large ribosomal subunit protein eL37
38Lk60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL38
39Ll60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL39
40LmUbiquitin-60S ribosomal protein L40polymer12814758.41UniProt (P62987)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Homo sapiens (Human)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
41Lo60S ribosomal protein L36apolymer10612477.01UniProt (P83881)
Pfam (PF00935)
In PDB		Homo sapiens (Human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
42Lp60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL43
43Lr60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
In PDB		Homo sapiens (Human)Large ribosomal subunit protein eL28
44AProliferation-associated protein 2G4polymer39443851.91UniProt (Q9UQ80)
Pfam (PF00557)
In PDB		Homo sapiens (Human)Cell cycle protein p38-2G4 homolog,hG4-1,ErbB3-binding protein 1
45BPoly GC double helix strand modeled for ES27L density next to EBP1 densitypolymer3611662.01Homo sapiens
46L5, L7, L8, LlMAGNESIUM IONnon-polymer24.341Chemie (MG)
47Lj, Lm, Lo, LpZINC IONnon-polymer65.44Chemie (ZN)
48waterwater18.010Chemie (HOH)
Sequence modifications
L5: 1 - 5070 (GenBank: 86475748)
PDBExternal DatabaseDetails
C 2113G 115460conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains45
Total formula weight2594713.3
Non-Polymers*Number of molecules45
Total formula weight1258.1
All*Total formula weight2595971.5
*Water molecules are not included.

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PDB entries from 2024-07-24

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