7B6V
Sheep Polyomavirus VP1 in complex with 5 mM Forssman antigen pentaose and 20 mM 3'-sialyllactosamine
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AAA, BBB, CCC, DDD, EEE... | Capsid protein VP1 | polymer | 276 | 30577.4 | 10 | UniProt (A0A0E3ZCF3) Pfam (PF00718) In PDB | Sheep polyomavirus 1 | |
2 | AaA, BaB, DaD, EaE, FaF... | 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose | branched | 748.7 | 9 | In PDB GlyTouCan (G88796WA) | |||
3 | CaC | 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G80062GG) | |||
4 | FFF, HHH, III, AAA, DDD | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 5 | Chemie (SIA) | |||
5 | EEE, FFF, GGG, HHH, III... | MAGNESIUM ION | non-polymer | 24.3 | 10 | Chemie (MG) | |||
6 | EEE, HHH | 1,2-ETHANEDIOL | non-polymer | 62.1 | 3 | Chemie (EDO) | |||
7 | JJJ | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 1 | Chemie (PGE) | |||
8 | JJJ | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
9 | water | water | 18.0 | 2352 | Chemie (HOH) |
Sequence modifications
AAA, BBB, CCC, DDD, EEE, FFF, GGG, HHH, III, JJJ: 20 - 291 (UniProt: A0A0E3ZCF3)
PDB | External Database | Details |
---|---|---|
Gly 16 | - | expression tag |
Ser 17 | - | expression tag |
His 18 | - | expression tag |
Met 19 | - | expression tag |
Ser 95 | Cys 96 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 305774.3 | |
Branched | Number of molecules | 10 |
Total formula weight | 7649.0 | |
Non-Polymers* | Number of molecules | 20 |
Total formula weight | 2231.9 | |
All* | Total formula weight | 315655.2 |