7B6U

Sheep Polyomavirus VP1 in complex with 5 mM Forssman antigen pentaose and 20 mM 6'-sialyllactosamine

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, D, E... (AAA, BBB, CCC, DDD, EEE...)	Capsid protein VP1	polymer	276	30577.4	10	UniProt (A0A0E3ZCF3) Pfam (PF00718)	Sheep polyomavirus 1
2	K, O, R, U, X (AaA, DaD, FaF, HaH, JaJ)	N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		674.6	5	In PDB BIRD (PRD_900046) GlyTouCan (G73578JC)
3	L, M, N, P, Q... (AdA, BbB, CaC, DdD, EaE...)	2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose	branched		748.7	10	In PDB GlyTouCan (G88796WA)
4	DA, HA, KA, MA, RA... (BBB, EEE, FFF, GGG, III...)	1,2-ETHANEDIOL	non-polymer		62.1	7	Chemie (EDO)
5	AA, CA, EA, FA, GA... (AAA, BBB, CCC, DDD, EEE...)	DI(HYDROXYETHYL)ETHER	non-polymer		106.1	12	Chemie (PEG)
6	BA (BBB)	N-acetyl-alpha-neuraminic acid	non-polymer		309.3	1	Chemie (SIA)
7	LA, OA (GGG, HHH)	TRIETHYLENE GLYCOL	non-polymer		150.2	2	Chemie (PGE)
8	AB, BB, CB, DB, EB... (FFF, GGG, HHH, III, JJJ...)	water	water		18.0	2023	Chemie (HOH)

Sequence modifications

AAA, BBB, CCC, DDD, EEE, FFF, GGG, HHH, III, JJJ: 20 - 291 (UniProt: A0A0E3ZCF3)

PDB	External Database	Details
Gly 16	-	expression tag
Ser 17	-	expression tag
His 18	-	expression tag
Met 19	-	expression tag
Ser 95	Cys 96	conflict

Contents of the asymmetric unit

Polymers	Number of chains	10
	Total formula weight	305774.3
Branched	Number of molecules	15
	Total formula weight	10859.8
Non-Polymers*	Number of molecules	22
	Total formula weight	2317.5
All*	Total formula weight	318951.7

*Water molecules are not included.