7B6U
Sheep Polyomavirus VP1 in complex with 5 mM Forssman antigen pentaose and 20 mM 6'-sialyllactosamine
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | AAA, BBB, CCC, DDD, EEE... | Capsid protein VP1 | polymer | 276 | 30577.4 | 10 | UniProt (A0A0E3ZCF3) Pfam (PF00718) In PDB | Sheep polyomavirus 1 | |
| 2 | AaA, DaD, FaF, HaH, JaJ | N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 674.6 | 5 | In PDB BIRD (PRD_900046) GlyTouCan (G73578JC) | |||
| 3 | AdA, BbB, CaC, DdD, EaE... | 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose | branched | 748.7 | 10 | In PDB GlyTouCan (G88796WA) | |||
| 4 | BBB, EEE, FFF, GGG, III... | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
| 5 | AAA, BBB, CCC, DDD, EEE... | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 12 | Chemie (PEG) | |||
| 6 | BBB | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 1 | Chemie (SIA) | |||
| 7 | GGG, HHH | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 2 | Chemie (PGE) | |||
| 8 | water | water | 18.0 | 2023 | Chemie (HOH) |
Sequence modifications
AAA, BBB, CCC, DDD, EEE, FFF, GGG, HHH, III, JJJ: 20 - 291 (UniProt: A0A0E3ZCF3)
| PDB | External Database | Details |
|---|---|---|
| Gly 16 | - | expression tag |
| Ser 17 | - | expression tag |
| His 18 | - | expression tag |
| Met 19 | - | expression tag |
| Ser 95 | Cys 96 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 305774.3 | |
| Branched | Number of molecules | 15 |
| Total formula weight | 10859.8 | |
| Non-Polymers* | Number of molecules | 22 |
| Total formula weight | 2317.5 | |
| All* | Total formula weight | 318951.7 |
