7B6U
Sheep Polyomavirus VP1 in complex with 5 mM Forssman antigen pentaose and 20 mM 6'-sialyllactosamine
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2019-12-13 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00004 |
Spacegroup name | P 31 |
Unit cell lengths | 129.645, 129.645, 220.431 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.470 - 1.901 |
Rwork | 0.146 |
R-free | 0.17260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6y61 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.650 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.480 | 2.020 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmeas | 0.146 | 1.223 |
Number of reflections | 325151 | 51994 |
<I/σ(I)> | 9.46 | 1.33 |
Completeness [%] | 99.8 | |
Redundancy | 5.3 | |
CC(1/2) | 0.996 | 0.441 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | KSCN, PEG 3350 |