7B6S
Sheep Polyomavirus VP1 in complex with 10 mM Forssman antigen pentaose
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (AAA, BBB, CCC, DDD, EEE...) | Capsid protein VP1 | polymer | 276 | 30577.4 | 10 | UniProt (A0A0E3ZCF3) UniProt (by SIFTS) (A0ACD6B8T1) | Sheep polyomavirus 1 | |
| 2 | K, L, N, P, R... (AaA, BaB, DaD, FbF, HaH...) | 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose | branched | 748.7 | 6 | In PDB GlyTouCan (G88796WA) | |||
| 3 | M, O, Q, T (CaC, EaE, GaG, JaJ) | 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | branched | 910.8 | 4 | In PDB GlyTouCan (G80062GG) | |||
| 4 | BA, JA, KA, PA, QA... (DDD, FFF, HHH, AAA, III...) | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 9 | Chemie (MPD) | |||
| 5 | AA, AB, EA, HA, LA... (CCC, JJJ, DDD, EEE, FFF...) | MAGNESIUM ION | non-polymer | 24.3 | 10 | Chemie (MG) | |||
| 6 | CA, DA, FA, SA, Y... (DDD, EEE, HHH, CCC, JJJ) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 6 | Chemie (EDO) | |||
| 7 | GA, MA, RA, VA, Z (EEE, GGG, HHH, III, CCC) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 5 | Chemie (PEG) | |||
| 8 | IA, NA, WA (FFF, GGG, III) | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 3 | Chemie (PGE) | |||
| 9 | BB, CB, DB, EB, FB... (AAA, BBB, CCC, DDD, EEE...) | water | water | 18.0 | 2235 | Chemie (HOH) |
Sequence modifications
AAA, BBB, CCC, DDD, EEE, FFF, GGG, HHH, III, JJJ: 20 - 291 (UniProt: A0A0E3ZCF3)
| PDB | External Database | Details |
|---|---|---|
| Gly 16 | - | expression tag |
| Ser 17 | - | expression tag |
| His 18 | - | expression tag |
| Met 19 | - | expression tag |
| Ser 95 | Cys 96 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 305774.3 | |
| Branched | Number of molecules | 10 |
| Total formula weight | 8135.4 | |
| Non-Polymers* | Number of molecules | 33 |
| Total formula weight | 2660.1 | |
| All* | Total formula weight | 316569.9 |
