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7AI1

Crystal structure of human MDM2-G443T RING domain homodimer bound to UbcH5B-Ub (Crystal form 2)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D
(AAA, DDD)
E3 ubiquitin-protein ligase Mdm2polymer758329.92UniProt (Q00987)
Pfam (PF13920)
Homo sapiens (Human)Double minute 2 protein,Hdm2,Oncoprotein Mdm2,RING-type E3 ubiquitin transferase Mdm2,p53-binding protein Mdm2
2B, E
(BBB, EEE)
Ubiquitin-conjugating enzyme E2 D2polymer14716851.42UniProt (P62837)
Pfam (PF00179)
Homo sapiens (Human)(E3-independent) E2 ubiquitin-conjugating enzyme D2,E2 ubiquitin-conjugating enzyme D2,Ubiquitin carrier protein D2,Ubiquitin-conjugating enzyme E2(17)KB 2,Ubiquitin-conjugating enzyme E2-17 kDa 2,Ubiquitin-protein ligase D2,p53-regulated ubiquitin-conjugating enzyme 1
3C, F
(CCC, FFF)
Polyubiquitin-Bpolymer818922.12UniProt (P0CG47)
Pfam (PF00240)
Homo sapiens (Human)
4G, L
(AAA, DDD)
CHLORIDE IONnon-polymer35.52Chemie (CL)
5H, I, M, N
(AAA, DDD)
ZINC IONnon-polymer65.44Chemie (ZN)
6J, K
(BBB)
1,2-ETHANEDIOLnon-polymer62.12Chemie (EDO)
7O, P, Q, R, S...
(AAA, BBB, CCC, DDD, EEE...)
waterwater18.0278Chemie (HOH)
Sequence modifications
AAA, DDD: 419 - 491 (UniProt: Q00987)
PDBExternal DatabaseDetails
Gly 417-expression tag
Ser 418-expression tag
Thr 443Gly 443engineered mutation
BBB, EEE: 1 - 147 (UniProt: P62837)
PDBExternal DatabaseDetails
Arg 22Ser 22engineered mutation
Lys 85Cys 85engineered mutation
CCC, FFF: -2 - 76 (UniProt: P0CG47)
PDBExternal DatabaseDetails
Gly -4-expression tag
Ser -3-expression tag
Ser 0-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight68206.9
Non-Polymers*Number of molecules8
Total formula weight456.7
All*Total formula weight68663.5
*Water molecules are not included.

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PDB entries from 2025-08-27

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