7A0S
50S Deinococcus radiodurans ribosome bounded with mycinamicin I
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | X | RNA (2732-MER) | polymer | 2880 | 933429.1 | 1 | GenBank (1026245073) | Deinococcus radiodurans R1 | |
| 2 | Y | RNA (122-MER) | polymer | 123 | 39605.7 | 1 | GenBank (11612676) | Deinococcus radiodurans R1 | |
| 3 | A | 50S ribosomal protein L2 | polymer | 274 | 29976.6 | 1 | UniProt (Q9RXJ9) Pfam (PF00181) Pfam (PF03947) In PDB | Deinococcus radiodurans R1 | |
| 4 | B | 50S ribosomal protein L3 | polymer | 206 | 22033.6 | 1 | UniProt (Q9RXK2) Pfam (PF00297) In PDB | Deinococcus radiodurans R1 | |
| 5 | C | 50S ribosomal protein L4 | polymer | 205 | 22308.2 | 1 | UniProt (Q9RXK1) Pfam (PF00573) In PDB | Deinococcus radiodurans R1 | |
| 6 | D | 50S ribosomal protein L5 | polymer | 177 | 19992.5 | 1 | UniProt (Q9RXJ0) Pfam (PF00281) Pfam (PF00673) In PDB | Deinococcus radiodurans R1 | |
| 7 | E | 50S ribosomal protein L6 | polymer | 171 | 18266.0 | 1 | UniProt (Q9RSL3) Pfam (PF00347) In PDB | Deinococcus radiodurans R1 | |
| 8 | G | 50S ribosomal protein L13 | polymer | 143 | 15966.4 | 1 | UniProt (Q9RXY1) Pfam (PF00572) In PDB | Deinococcus radiodurans R1 | |
| 9 | H | 50S ribosomal protein L14 | polymer | 134 | 14256.5 | 1 | UniProt (Q9RXJ2) Pfam (PF00238) In PDB | Deinococcus radiodurans R1 | |
| 10 | I | 50S ribosomal protein L15 | polymer | 137 | 14798.9 | 1 | UniProt (Q9RSK9) Pfam (PF00828) In PDB | Deinococcus radiodurans R1 | |
| 11 | J | 50S ribosomal protein L16 | polymer | 136 | 15543.2 | 1 | UniProt (Q9RXJ5) Pfam (PF00252) In PDB | Deinococcus radiodurans R1 | |
| 12 | K | 50S ribosomal protein L17 | polymer | 116 | 12926.1 | 1 | UniProt (Q9RSJ5) Pfam (PF01196) In PDB | Deinococcus radiodurans R1 | |
| 13 | L | 50S ribosomal protein L18 | polymer | 104 | 11098.7 | 1 | UniProt (Q9RSL2) Pfam (PF00861) In PDB | Deinococcus radiodurans R1 | |
| 14 | M | 50S ribosomal protein L19 | polymer | 166 | 18347.8 | 1 | UniProt (Q9RWB4) Pfam (PF01245) In PDB | Deinococcus radiodurans R1 | |
| 15 | N | 50S ribosomal protein L20 | polymer | 117 | 13860.1 | 1 | UniProt (Q9RSW7) Pfam (PF00453) In PDB | Deinococcus radiodurans R1 | |
| 16 | O | 50S ribosomal protein L21 | polymer | 98 | 10980.6 | 1 | UniProt (Q9RY64) Pfam (PF00829) In PDB | Deinococcus radiodurans R1 | |
| 17 | P | 50S ribosomal protein L22 | polymer | 134 | 15190.9 | 1 | UniProt (Q9RXJ7) Pfam (PF00237) In PDB | Deinococcus radiodurans R1 | |
| 18 | Q | 50S ribosomal protein L23 | polymer | 93 | 10336.9 | 1 | UniProt (Q9RXK0) Pfam (PF00276) In PDB | Deinococcus radiodurans R1 | |
| 19 | R | 50S ribosomal protein L24 | polymer | 110 | 11770.7 | 1 | UniProt (Q9RXJ1) Pfam (PF00467) Pfam (PF17136) In PDB | Deinococcus radiodurans R1 | |
| 20 | S | 50S ribosomal protein L25 | polymer | 175 | 19184.0 | 1 | UniProt (Q9RX88) Pfam (PF01386) Pfam (PF14693) In PDB | Deinococcus radiodurans R1 | General stress protein CTC |
| 21 | T | 50S ribosomal protein L27 | polymer | 91 | 9609.1 | 1 | UniProt (Q9RY65) Pfam (PF01016) In PDB | Deinococcus radiodurans R1 | |
| 22 | U | 50S ribosomal protein L28 | polymer | 74 | 8148.6 | 1 | UniProt (Q9RRG8) Pfam (PF00830) In PDB | Deinococcus radiodurans R1 | |
| 23 | V | 50S ribosomal protein L29 | polymer | 61 | 7073.2 | 1 | UniProt (Q9RXJ4) Pfam (PF00831) In PDB | Deinococcus radiodurans R1 | |
| 24 | W | 50S ribosomal protein L30 | polymer | 55 | 6079.2 | 1 | UniProt (Q9RSL0) Pfam (PF00327) In PDB | Deinococcus radiodurans R1 | |
| 25 | Z | 50S ribosomal protein L32 | polymer | 58 | 6579.7 | 1 | UniProt (P49228) Pfam (PF01783) In PDB | Deinococcus radiodurans R1 | |
| 26 | 1 | 50S ribosomal protein L33 | polymer | 49 | 5771.8 | 1 | UniProt (Q9RSS4) Pfam (PF00471) In PDB | Deinococcus radiodurans R1 | |
| 27 | 2 | 50S ribosomal protein L34 | polymer | 47 | 5626.6 | 1 | UniProt (Q9RSH2) Pfam (PF00468) In PDB | Deinococcus radiodurans R1 | |
| 28 | 3 | 50S ribosomal protein L35 | polymer | 63 | 7130.7 | 1 | UniProt (Q9RSW6) Pfam (PF01632) In PDB | Deinococcus radiodurans R1 | |
| 29 | X | mycinamicin I | non-polymer | 711.9 | 1 | Chemie (QU2) | |||
| 30 | X, Y, A, B, I... | MAGNESIUM ION | non-polymer | 24.3 | 367 | Chemie (MG) | |||
| 31 | X | SPERMIDINE | non-polymer | 145.2 | 8 | Chemie (SPD) | |||
| 32 | X | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 4 | Chemie (MPD) | |||
| 33 | X | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 34 | X | ETHANOL | non-polymer | 46.1 | 1 | Chemie (EOH) | |||
| 35 | X | CALCIUM ION | non-polymer | 40.1 | 5 | Chemie (CA) | |||
| 36 | X | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) |
Sequence modifications
X: 1 - 2880 (GenBank: 1026245073)
| PDB | External Database | Details |
|---|---|---|
| U 1526 | C 140011 | conflict |
| A 2779 | C 141264 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 28 |
| Total formula weight | 1325891.1 | |
| Non-Polymers* | Number of molecules | 388 |
| Total formula weight | 11575.0 | |
| All* | Total formula weight | 1337466.2 |
