6ZWA
CLIP peptide bound to chicken MHC class II molecule (BL-2) from B19 haplotype
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | MHC class II alpha chain | polymer | 183 | 21119.7 | 1 | UniProt (Q4U5Z6) Pfam (PF00993) Pfam (PF07654) | Gallus gallus (Chicken) | MHC class II antigen alpha,MHC class II antigen alpha chain |
| 2 | B (B) | Invariant chain isoform p41,MHC class II beta chain 2 | polymer | 219 | 24535.4 | 1 | UniProt (Q6J613) UniProt (A5HUL4) Pfam (PF00969) Pfam (PF07654) | Gallus gallus (Chicken) | |
| 3 | C (B) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 4 | D, E (A, B) | water | water | 18.0 | 129 | Chemie (HOH) |
Sequence modifications
A: 5 - 185 (UniProt: Q4U5Z6)
B: -31 - -12 (UniProt: Q6J613)
B: 5 - 189 (UniProt: A5HUL4)
| PDB | External Database | Details |
|---|---|---|
| Arg 3 | - | expression tag |
| Arg 4 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -11 | - | linker |
| Gly -10 | - | linker |
| Gly -9 | - | linker |
| Gly -8 | - | linker |
| Ser -7 | - | linker |
| Gly -6 | - | linker |
| Gly -5 | - | linker |
| Gly -4 | - | linker |
| Gly -3 | - | linker |
| Ser -2 | - | linker |
| Gly -1 | - | linker |
| Gly 0 | - | linker |
| Gly 1 | - | linker |
| Gly 2 | - | linker |
| Ser 3 | - | linker |
| Ser 4 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Cys 9 | Tyr 35 | conflict |
| Ala 11 | Lys 37 | conflict |
| Ser 13 | Gly 39 | conflict |
| Tyr 26 | Phe 52 | conflict |
| Gln 28 | Asp 54 | conflict |
| Tyr 30 | Gln 56 | conflict |
| Tyr 37 | Phe 63 | conflict |
| Ser 51 | Thr 77 | conflict |
| Pro 56 | Arg 82 | conflict |
| Arg 71 | Leu 97 | conflict |
| Phe 78 | Val 104 | conflict |
| Gly 85 | Ile 111 | conflict |
| Val 86 | Leu 112 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 45655.0 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 106.1 | |
| All* | Total formula weight | 45761.1 |
