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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6ZTL

E. coli 70S-RNAP expressome complex in collided state bound to NusG

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA16S ribosomal RNApolymer1542499888.41GenBank (CP054232.1)Escherichia coli
2AB30S ribosomal protein S2polymer24126781.71UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coliSmall ribosomal subunit protein uS2
3AC30S ribosomal protein S3polymer23326031.31UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coliSmall ribosomal subunit protein uS3
4AD30S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF01479)
Pfam (PF00163)
In PDB		Escherichia coliSmall ribosomal subunit protein uS4
5AE30S ribosomal protein S5polymer16717617.51UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coliSmall ribosomal subunit protein uS5
6AF30S ribosomal protein S6polymer13115197.01UniProt (W8T6F0)
UniProt (by SIFTS) (P02358)
Pfam (PF01250)
In PDB		Escherichia coli
7AG30S ribosomal protein S7polymer15617637.41UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coliSmall ribosomal subunit protein uS7
8AH30S ribosomal protein S8polymer13014146.61UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coliSmall ribosomal subunit protein uS8
9AI30S ribosomal protein S9polymer13014886.31UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coliSmall ribosomal subunit protein uS9
10AJ30S ribosomal protein S10polymer10311755.61UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coliSmall ribosomal subunit protein uS10
11AK30S ribosomal protein S11polymer12913871.01UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coliSmall ribosomal subunit protein uS11
12AL30S ribosomal protein S12polymer12413814.21UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coliSmall ribosomal subunit protein uS12
13AM30S ribosomal protein S13polymer11813128.51UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coliSmall ribosomal subunit protein uS13
14AN30S ribosomal protein S14polymer10111606.61UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coliSmall ribosomal subunit protein uS14
15AO30S ribosomal protein S15polymer8910290.81UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coliSmall ribosomal subunit protein uS15
16AP30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coliSmall ribosomal subunit protein bS16
17AQ30S ribosomal protein S17polymer849724.51UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coliSmall ribosomal subunit protein uS17
18AR30S ribosomal protein S18polymer759005.51UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coliSmall ribosomal subunit protein bS18
19AS30S ribosomal protein S19polymer9210455.41UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coliSmall ribosomal subunit protein uS19
20AT30S ribosomal protein S20polymer879708.51UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coliSmall ribosomal subunit protein bS20
21AU30S ribosomal protein S21polymer718524.01UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coliSmall ribosomal subunit protein bS21
22AVmRNApolymer4915789.51synthetic construct
23AWtRNA(fmet) P-sitepolymer7724832.91GenBank (CP047127.1)Escherichia coli
24AXPhe-NH-tRNA(Phe) A-sitepolymer7624751.01GenBank (CP054236.1)Escherichia coli
25BA23S ribosomal RNApolymer2904941820.61GenBank (CP023165.1)Escherichia coli
26BB5S ribosomal RNApolymer12038790.11GenBank (CP035706.1)Escherichia coli
27BC50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
28BD50S ribosomal protein L3polymer20922291.61UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
29BE50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coliLarge ribosomal subunit protein uL4
30BF50S ribosomal protein L5polymer17920333.61UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coliLarge ribosomal subunit protein uL5
31BG50S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coliLarge ribosomal subunit protein uL6
32BH50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coliLarge ribosomal subunit protein bL9
33BK50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coliLarge ribosomal subunit protein uL13
34BL50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coliLarge ribosomal subunit protein uL14
35BM50S ribosomal protein L15polymer14414994.41UniProt (A0A6D2WI95)
UniProt (by SIFTS) (P02413)
Pfam (PF00828)
In PDB		Escherichia coli
36BN50S ribosomal protein L16polymer13615327.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
37BO50S ribosomal protein L17polymer12714393.71UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coliLarge ribosomal subunit protein bL17
38BP50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coliLarge ribosomal subunit protein uL18
39BQ50S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coliLarge ribosomal subunit protein bL19
40BR50S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coliLarge ribosomal subunit protein bL20
41BS50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coliLarge ribosomal subunit protein bL21
42BT50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliLarge ribosomal subunit protein uL22
43BU50S ribosomal protein L23polymer10011222.21UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coliLarge ribosomal subunit protein uL23
44BV50S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coliLarge ribosomal subunit protein uL24
45BW50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coliLarge ribosomal subunit protein bL25
46BX50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
47BY50S ribosomal protein L28polymer789027.61UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coliLarge ribosomal subunit protein bL28
48BZ50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coliLarge ribosomal subunit protein uL29
49B150S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coliLarge ribosomal subunit protein uL30
50B250S ribosomal protein L32polymer576463.41UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coliLarge ribosomal subunit protein bL32
51B350S ribosomal protein L33polymer556388.61UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coliLarge ribosomal subunit protein bL33
52B450S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coliLarge ribosomal subunit protein bL34
53B550S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
54B650S ribosomal protein L36polymer505720.11UniProt (A0A2X1PTA3)
UniProt (by SIFTS) (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli
55CNNon-template DNA strandpolymer3912063.81synthetic construct
56CTTemplate DNA strandpolymer3911872.61synthetic construct
57CA, CBDNA-directed RNA polymerase subunit alphapolymer32936558.72UniProt (P0A7Z4)
Pfam (PF01193)
Pfam (PF01000)
Pfam (PF03118)
In PDB		Escherichia coliRNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha
58CCDNA-directed RNA polymerase subunit betapolymer1342150820.91UniProt (P0A8V2)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF10385)
Pfam (PF00562)
Pfam (PF04560)
In PDB		Escherichia coliRNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta
59CDDNA-directed RNA polymerase subunit beta'polymer1407155366.81UniProt (P0A8T8)
Pfam (PF00623)
UniProt (by SIFTS) (P0A8T7)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
Pfam (PF04997)
In PDB		Escherichia coliRNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta'
60CEDNA-directed RNA polymerase subunit omegapolymer9110249.51UniProt (P0A800)
Pfam (PF01192)
In PDB		Escherichia coliRNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega
61CFTranscription termination/antitermination protein NusGpolymer18120560.51UniProt (C3SID2)
UniProt (by SIFTS) (P0AFG0)
Pfam (PF00467)
Pfam (PF02357)
In PDB		Escherichia coli
62AA, BA, BB, BC, BD...MAGNESIUM IONnon-polymer24.3441Chemie (MG)
63AXPHENYLALANINEnon-polymer165.21Chemie (PHE)
64B6, CDZINC IONnon-polymer65.43Chemie (ZN)
Sequence modifications
AE: 1 - 167 (UniProt: P0A7W1)
PDBExternal DatabaseDetails
Cys 9Gly 9conflict
Ala 151Glu 151conflict
BA: 1 - 2904 (GenBank: CP023165.1)
PDBExternal DatabaseDetails
-G 3069687deletion
-C 3069686deletion
U 1211C 3069020conflict
G 1723A 3068508conflict
G 2211A 3068020conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains62
Total formula weight2630445.7
Non-Polymers*Number of molecules445
Total formula weight11079.9
All*Total formula weight2641525.7
*Water molecules are not included.

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PDB entries from 2024-07-24

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