6ZP4
SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | a | 40S ribosomal protein SA | polymer | 295 | 32883.9 | 1 | UniProt (P08865) Pfam (PF00318) Pfam (PF16122) In PDB | Homo sapiens (Human) | 37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4,Small ribosomal subunit protein uS2 |
| 2 | p | 40S ribosomal protein S3a | polymer | 264 | 30002.1 | 1 | UniProt (P61247) Pfam (PF01015) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS1,v-fos transformation effector protein,Fte-1 |
| 3 | d | 40S ribosomal protein S2 | polymer | 293 | 31376.5 | 1 | UniProt (P15880) Pfam (PF00333) Pfam (PF03719) In PDB | Homo sapiens (Human) | 40S ribosomal protein S4,Protein LLRep3,Small ribosomal subunit protein uS5 |
| 4 | Q | 40S ribosomal protein S26 | polymer | 115 | 13047.5 | 1 | UniProt (P62854) Pfam (PF01283) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS26 |
| 5 | q | 40S ribosomal protein S4, X isoform | polymer | 263 | 29654.9 | 1 | UniProt (P62701) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) In PDB | Homo sapiens (Human) | SCR10,Single copy abundant mRNA protein,Small ribosomal subunit protein eS4 |
| 6 | W | 60S ribosomal protein L41 | polymer | 25 | 3473.5 | 1 | UniProt (P62945) Pfam (PF05162) In PDB | Homo sapiens (Human) | HG12,Large ribosomal subunit protein eL41 |
| 7 | r | 40S ribosomal protein S6 | polymer | 249 | 28751.9 | 1 | UniProt (P62753) Pfam (PF01092) In PDB | Homo sapiens (Human) | Phosphoprotein NP33,Small ribosomal subunit protein eS6 |
| 8 | s | 40S ribosomal protein S7 | polymer | 194 | 22168.9 | 1 | UniProt (P62081) Pfam (PF01251) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS7 |
| 9 | t | 40S ribosomal protein S8 | polymer | 208 | 24263.4 | 1 | UniProt (P62241) Pfam (PF01201) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS8 |
| 10 | c | 40S ribosomal protein S9 | polymer | 194 | 22641.6 | 1 | UniProt (P46781) Pfam (PF00163) Pfam (PF01479) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein uS4 |
| 11 | n | 40S ribosomal protein S11 | polymer | 158 | 18468.8 | 1 | UniProt (P62280) Pfam (PF16205) Pfam (PF00366) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein uS17 |
| 12 | m | 40S ribosomal protein S13 | polymer | 151 | 17259.4 | 1 | UniProt (P62277) Pfam (PF08069) Pfam (PF00312) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein uS15 |
| 13 | y | 40S ribosomal protein S21 | polymer | 83 | 9124.4 | 1 | UniProt (P63220) Pfam (PF01249) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS21 |
| 14 | D | 40S ribosomal protein S15a | polymer | 130 | 14865.6 | 1 | UniProt (P62244) Pfam (PF00410) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein uS8 |
| 15 | z | 40S ribosomal protein S24 | polymer | 133 | 15463.3 | 1 | UniProt (P62847) Pfam (PF01282) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS24 |
| 16 | R | 40S ribosomal protein S27 | polymer | 84 | 9480.2 | 1 | UniProt (P42677) Pfam (PF01667) In PDB | Homo sapiens (Human) | Metallopan-stimulin 1,MPS-1,Small ribosomal subunit protein eS27 |
| 17 | T | 40S ribosomal protein S30 | polymer | 59 | 6668.9 | 1 | UniProt (P62861) Pfam (PF04758) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS30 |
| 18 | 2 | 18S ribosomal RNA | polymer | 1868 | 602432.6 | 1 | GenBank (337376) | Homo sapiens (Human) | |
| 19 | w | 40S ribosomal protein S17 | polymer | 135 | 15578.2 | 1 | UniProt (P08708) Pfam (PF00833) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS17 |
| 20 | b | 40S ribosomal protein S3 | polymer | 243 | 26729.4 | 1 | UniProt (P23396) Pfam (PF07650) Pfam (PF00189) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein uS3 |
| 21 | e | 40S ribosomal protein S5 | polymer | 204 | 22913.5 | 1 | UniProt (P46782) Pfam (PF00177) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein uS7 |
| 22 | u | 40S ribosomal protein S10 | polymer | 165 | 18933.8 | 1 | UniProt (P46783) Pfam (PF03501) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS10 |
| 23 | v | 40S ribosomal protein S12 | polymer | 132 | 14539.0 | 1 | UniProt (P25398) Pfam (PF01248) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS12 |
| 24 | o | 40S ribosomal protein S15 | polymer | 145 | 17076.2 | 1 | UniProt (P62841) Pfam (PF00203) In PDB | Homo sapiens (Human) | RIG protein,Small ribosomal subunit protein uS19 |
| 25 | g | 40S ribosomal protein S16 | polymer | 146 | 16477.4 | 1 | UniProt (P62249) Pfam (PF00380) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein uS9 |
| 26 | k | 40S ribosomal protein S18 | polymer | 152 | 17759.8 | 1 | UniProt (P62269) Pfam (PF00416) In PDB | Homo sapiens (Human) | Ke-3,Ke3,Small ribosomal subunit protein uS13 |
| 27 | x | 40S ribosomal protein S19 | polymer | 145 | 16091.6 | 1 | UniProt (P39019) Pfam (PF01090) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS19 |
| 28 | h | 40S ribosomal protein S20 | polymer | 119 | 13398.8 | 1 | UniProt (P60866) Pfam (PF00338) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein uS10 |
| 29 | P | 40S ribosomal protein S25 | polymer | 125 | 13776.2 | 1 | UniProt (P62851) Pfam (PF03297) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS25 |
| 30 | S | 40S ribosomal protein S28 | polymer | 69 | 7855.1 | 1 | UniProt (P62857) Pfam (PF01200) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein eS28 |
| 31 | l | 40S ribosomal protein S29 | polymer | 56 | 6690.8 | 1 | UniProt (P62273) Pfam (PF00253) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein uS14 |
| 32 | U | Ubiquitin-40S ribosomal protein S27a | polymer | 156 | 18004.0 | 1 | UniProt (P62979) Pfam (PF00240) Pfam (PF01599) In PDB | Homo sapiens (Human) | Ubiquitin carboxyl extension protein 80 |
| 33 | V | Receptor of activated protein C kinase 1 | polymer | 317 | 35115.7 | 1 | UniProt (P63244) Pfam (PF00400) In PDB | Homo sapiens (Human) | Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-2-like 1,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Small ribosomal subunit protein RACK1 |
| 34 | i | 40S ribosomal protein S14 | polymer | 151 | 16302.8 | 1 | UniProt (P62263) Pfam (PF00411) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein uS11 |
| 35 | j | 40S ribosomal protein S23 | polymer | 143 | 15844.7 | 1 | UniProt (P62266) Pfam (PF00164) In PDB | Homo sapiens (Human) | Small ribosomal subunit protein uS12 |
| 36 | G | Eukaryotic translation initiation factor 1A, X-chromosomal | polymer | 144 | 16488.4 | 1 | UniProt (P47813) Pfam (PF01176) In PDB | Homo sapiens (Human) | eIF-1A X isoform,Eukaryotic translation initiation factor 4C,eIF-4C |
| 37 | I | Eukaryotic translation initiation factor 3 subunit I | polymer | 325 | 36543.8 | 1 | UniProt (Q13347) Pfam (PF00400) Pfam (PF12894) In PDB | Homo sapiens (Human) | eIF3i,Eukaryotic translation initiation factor 3 subunit 2,TGF-beta receptor-interacting protein 1,TRIP-1,eIF-3-beta,eIF3 p36 |
| 38 | B | Eukaryotic translation initiation factor 3 subunit B | polymer | 814 | 92593.4 | 1 | UniProt (P55884) Pfam (PF00076) Pfam (PF08662) In PDB | Homo sapiens (Human) | eIF3b,Eukaryotic translation initiation factor 3 subunit 9,Prt1 homolog,hPrt1,eIF-3-eta,eIF3 p110,eIF3 p116 |
| 39 | A | Eukaryotic translation initiation factor 3 subunit A | polymer | 1382 | 166903.8 | 1 | UniProt (Q14152) Pfam (PF22591) Pfam (PF01399) In PDB | Homo sapiens (Human) | eIF3a,Eukaryotic translation initiation factor 3 subunit 10,eIF-3-theta,eIF3 p167,eIF3 p180,eIF3 p185 |
| 40 | C | Eukaryotic translation initiation factor 3 subunit C | polymer | 913 | 105503.9 | 1 | UniProt (Q99613) Pfam (PF05470) Pfam (PF01399) In PDB | Homo sapiens (Human) | eIF3c,Eukaryotic translation initiation factor 3 subunit 8,eIF3 p110 |
| 41 | E | Eukaryotic translation initiation factor 3 subunit E | polymer | 445 | 52281.6 | 1 | UniProt (P60228) Pfam (PF01399) Pfam (PF21357) Pfam (PF09440) In PDB | Homo sapiens (Human) | eIF3e,Eukaryotic translation initiation factor 3 subunit 6,Viral integration site protein INT-6 homolog,eIF-3 p48 |
| 42 | F | Eukaryotic translation initiation factor 3 subunit F | polymer | 357 | 37593.6 | 1 | UniProt (O00303) Pfam (PF01398) Pfam (PF13012) In PDB | Homo sapiens (Human) | eIF3f,Deubiquitinating enzyme eIF3f,Eukaryotic translation initiation factor 3 subunit 5,eIF-3-epsilon,eIF3 p47 |
| 43 | H | Eukaryotic translation initiation factor 3 subunit H | polymer | 352 | 39979.3 | 1 | UniProt (O15372) Pfam (PF01398) Pfam (PF19445) In PDB | Homo sapiens (Human) | eIF3h,Eukaryotic translation initiation factor 3 subunit 3,eIF-3-gamma,eIF3 p40 subunit |
| 44 | K | Eukaryotic translation initiation factor 3 subunit K | polymer | 218 | 25083.6 | 1 | UniProt (Q9UBQ5) Pfam (PF10075) In PDB | Homo sapiens (Human) | eIF3k,Eukaryotic translation initiation factor 3 subunit 12,Muscle-specific gene M9 protein,PLAC-24,eIF-3 p25,eIF-3 p28 |
| 45 | L | Eukaryotic translation initiation factor 3 subunit L | polymer | 564 | 66803.7 | 1 | UniProt (Q9Y262) Pfam (PF10255) In PDB | Homo sapiens (Human) | eIF3l,Eukaryotic translation initiation factor 3 subunit 6-interacting protein,Eukaryotic translation initiation factor 3 subunit E-interacting protein |
| 46 | M | Eukaryotic translation initiation factor 3 subunit M | polymer | 374 | 42555.8 | 1 | UniProt (Q7L2H7) Pfam (PF01399) Pfam (PF18005) In PDB | Homo sapiens (Human) | eIF3m,Fetal lung protein B5,hFL-B5,PCI domain-containing protein 1 |
| 47 | N | Eukaryotic translation initiation factor 3 subunit D | polymer | 548 | 64060.8 | 1 | UniProt (O15371) Pfam (PF05091) In PDB | Homo sapiens (Human) | eIF3d,Eukaryotic translation initiation factor 3 subunit 7,eIF-3-zeta,eIF3 p66 |
| 48 | X | Unknown factor | polymer | 78 | 5562.1 | 1 | Homo sapiens (Human) | ||
| 49 | 1 | tRNA | polymer | 75 | 24215.5 | 1 | Homo sapiens (Human) | ||
| 50 | 4 | Eukaryotic translation initiation factor 2 subunit 2 | polymer | 333 | 38454.5 | 1 | UniProt (P20042) Pfam (PF01873) In PDB | Homo sapiens (Human) | Eukaryotic translation initiation factor 2 subunit beta,eIF-2-beta |
| 51 | O | Eukaryotic translation initiation factor 2 subunit 1 | polymer | 315 | 36161.2 | 1 | UniProt (P05198) Pfam (PF00575) Pfam (PF07541) In PDB | Homo sapiens (Human) | Eukaryotic translation initiation factor 2 subunit alpha,eIF-2alpha |
| 52 | Y | Eukaryotic translation initiation factor 2 subunit 3 | polymer | 472 | 51178.4 | 1 | UniProt (P41091) Pfam (PF00009) Pfam (PF03144) Pfam (PF09173) In PDB | Homo sapiens (Human) | Eukaryotic translation initiation factor 2 subunit gamma X,eIF-2gX |
| 53 | Z | Eukaryotic translation initiation factor 1 | polymer | 113 | 12752.5 | 1 | UniProt (P41567) Pfam (PF01253) In PDB | Homo sapiens (Human) | eIF1,A121,Protein translation factor SUI1 homolog,Sui1iso1 |
| 54 | J | Non-structural protein 1 | polymer | 180 | 19801.3 | 1 | UniProt (P0DTD1) Pfam (PF11501) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | pp1ab,ORF1ab polyprotein,Non-structural protein 1 |
| 55 | Q, l, U, 4 | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 56 | Y | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
| 57 | Y | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) |
Sequence modifications
2: 1 - 1869 (GenBank: 337376)
| PDB | External Database | Details |
|---|---|---|
| C 1772 | G 1872 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 54 |
| Total formula weight | 2159631.4 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 809.1 | |
| All* | Total formula weight | 2160440.5 |
