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6ZME

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complex

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1L528S ribosomal RNApolymer50661638922.01Homo sapiens (Human)
2L75S ribosomal RNApolymer12138998.11GenBank (23898)Homo sapiens (Human)
3L85.8S ribosomal RNApolymer15750449.81GenBank (555853)Homo sapiens (Human)
4LA60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein uL2
5LB60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
In PDB
Homo sapiens (Human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
6LC60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Homo sapiens (Human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
7LD60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein uL18
8LE60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
9LF60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein uL30
10LG60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
11LH60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein uL6
12LI60S ribosomal protein L10-likepolymer21424570.91UniProt (Q96L21)
Pfam (PF00252)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein uL16-like
13LJ60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Homo sapiens (Human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
14LL60S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
In PDB
Homo sapiens (Human)Breast basic conserved protein 1,Large ribosomal subunit protein eL13
15LM60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
In PDB
Homo sapiens (Human)CAG-ISL 7,Large ribosomal subunit protein eL14
16LN60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL15
17LO60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
In PDB
Homo sapiens (Human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
18LP60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
In PDB
Homo sapiens (Human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
19LQ60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL18
20LR60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL19
21LS60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL20
22LT60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL21
23LU60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
In PDB
Homo sapiens (Human)EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15,Large ribosomal subunit protein eL22
24LV60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
In PDB
Homo sapiens (Human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
25LW60S ribosomal protein L24polymer15717825.11UniProt (P83731)
Pfam (PF01246)
In PDB
Homo sapiens (Human)60S ribosomal protein L30,Large ribosomal subunit protein eL24
26LX60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein uL23
27LY60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein uL24
28LZ60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL27
29La60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein uL15
30Lb60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
In PDB
Homo sapiens (Human)Cell surface heparin-binding protein HIP,Large ribosomal subunit protein eL29
31Lc60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL30
32Ld60S ribosomal protein L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL31
33Le60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL32
34Lf60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
In PDB
Homo sapiens (Human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
35Lg60S ribosomal protein L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL34
36Lh60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein uL29
37Li60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL36
38Lj60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
In PDB
Homo sapiens (Human)G1.16,Large ribosomal subunit protein eL37
39Lk60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL38
40Ll60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL39
41LmUbiquitin-60S ribosomal protein L40polymer12814758.41UniProt (P62987)
Pfam (PF00240)
Pfam (PF01020)
In PDB
Homo sapiens (Human)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
42Ln60S ribosomal protein L41polymer253473.51UniProt (P62945)
Pfam (PF05162)
In PDB
Homo sapiens (Human)HG12,Large ribosomal subunit protein eL41
43Lo60S ribosomal protein L36apolymer10612477.01UniProt (P83881)
Pfam (PF00935)
In PDB
Homo sapiens (Human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
44Lp60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL43
45Lr60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein eL28
46Ls60S acidic ribosomal protein P0polymer31734309.41UniProt (P05388)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)
In PDB
Homo sapiens (Human)60S ribosomal protein L10E,Large ribosomal subunit protein uL10
47Lt60S ribosomal protein L12polymer16517847.61UniProt (P30050)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Homo sapiens (Human)Large ribosomal subunit protein uL11
48Lz60S ribosomal protein L10apolymer21724879.41UniProt (P62906)
Pfam (PF00687)
In PDB
Homo sapiens (Human)CSA-19,Large ribosomal subunit protein uL1,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6
49S218S ribosomal RNApolymer1869602793.91Homo sapiens (Human)
50SA40S ribosomal protein SApolymer29532883.91UniProt (P08865)
Pfam (PF00318)
Pfam (PF16122)
In PDB
Homo sapiens (Human)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4,Small ribosomal subunit protein uS2
51SB40S ribosomal protein S3apolymer26430002.11UniProt (P61247)
Pfam (PF01015)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS1,v-fos transformation effector protein,Fte-1
52SD40S ribosomal protein S3polymer24326729.41UniProt (P23396)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein uS3
53SE40S ribosomal protein S4, X isoformpolymer26329654.91UniProt (P62701)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Homo sapiens (Human)SCR10,Single copy abundant mRNA protein,Small ribosomal subunit protein eS4
54SF40S ribosomal protein S5polymer20422913.51UniProt (P46782)
Pfam (PF00177)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein uS7
55SH40S ribosomal protein S7polymer19422168.91UniProt (P62081)
Pfam (PF01251)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS7
56SI40S ribosomal protein S8polymer20824263.41UniProt (P62241)
Pfam (PF01201)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS8
57SK40S ribosomal protein S10polymer16518933.81UniProt (P46783)
Pfam (PF03501)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS10
58SL40S ribosomal protein S11polymer15818468.81UniProt (P62280)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein uS17
59SP40S ribosomal protein S15polymer14517076.21UniProt (P62841)
Pfam (PF00203)
In PDB
Homo sapiens (Human)RIG protein,Small ribosomal subunit protein uS19
60SQ40S ribosomal protein S16polymer14616477.41UniProt (P62249)
Pfam (PF00380)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein uS9
61SR40S ribosomal protein S17polymer13515578.21UniProt (P08708)
Pfam (PF00833)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS17
62SS40S ribosomal protein S18polymer15217759.81UniProt (P62269)
Pfam (PF00416)
In PDB
Homo sapiens (Human)Ke-3,Ke3,Small ribosomal subunit protein uS13
63ST40S ribosomal protein S19polymer14516091.61UniProt (P39019)
Pfam (PF01090)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS19
64SU40S ribosomal protein S20polymer11913398.81UniProt (P60866)
Pfam (PF00338)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein uS10
65SV40S ribosomal protein S21polymer839124.41UniProt (P63220)
Pfam (PF01249)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS21
66SX40S ribosomal protein S23polymer14315844.71UniProt (P62266)
Pfam (PF00164)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein uS12
67Sa40S ribosomal protein S26polymer11513047.51UniProt (P62854)
Pfam (PF01283)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS26
68Sc40S ribosomal protein S28polymer697855.11UniProt (P62857)
Pfam (PF01200)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS28
69Sd40S ribosomal protein S29polymer566690.81UniProt (P62273)
Pfam (PF00253)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein uS14
70SgReceptor of activated protein C kinase 1polymer31735115.71UniProt (P63244)
Pfam (PF00400)
In PDB
Homo sapiens (Human)Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-2-like 1,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Small ribosomal subunit protein RACK1
71SC40S ribosomal protein S2polymer29331376.51UniProt (P15880)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Homo sapiens (Human)40S ribosomal protein S4,Protein LLRep3,Small ribosomal subunit protein uS5
72SG40S ribosomal protein S6polymer24928751.91UniProt (P62753)
Pfam (PF01092)
In PDB
Homo sapiens (Human)Phosphoprotein NP33,Small ribosomal subunit protein eS6
73SJ40S ribosomal protein S9polymer19422641.61UniProt (P46781)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein uS4
74SM40S ribosomal protein S12polymer13214539.01UniProt (P25398)
Pfam (PF01248)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS12
75SN40S ribosomal protein S13polymer15117259.41UniProt (P62277)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein uS15
76SO40S ribosomal protein S14polymer15116302.81UniProt (P62263)
Pfam (PF00411)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein uS11
77SW40S ribosomal protein S15apolymer13014865.61UniProt (P62244)
Pfam (PF00410)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein uS8
78SY40S ribosomal protein S24polymer13315463.31UniProt (P62847)
Pfam (PF01282)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS24
79SZ40S ribosomal protein S25polymer12513776.21UniProt (P62851)
Pfam (PF03297)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS25
80Sb40S ribosomal protein S27polymer849480.21UniProt (P42677)
Pfam (PF01667)
In PDB
Homo sapiens (Human)Metallopan-stimulin 1,MPS-1,Small ribosomal subunit protein eS27
81Se40S ribosomal protein S30polymer596668.91UniProt (P62861)
Pfam (PF04758)
In PDB
Homo sapiens (Human)Small ribosomal subunit protein eS30
82SfUbiquitin-40S ribosomal protein S27apolymer15618004.01UniProt (P62979)
Pfam (PF00240)
Pfam (PF01599)
In PDB
Homo sapiens (Human)Ubiquitin carboxyl extension protein 80
83CAProliferation-associated protein 2G4polymer39443851.91UniProt (Q9UQ80)
Pfam (PF00557)
In PDB
Homo sapiens (Human)Cell cycle protein p38-2G4 homolog,hG4-1,ErbB3-binding protein 1
84CCtRNApolymer7524004.31Homo sapiens (Human)
85CECoiled-coil domain-containing protein 124polymer22325890.41UniProt (Q96CT7)
Pfam (PF06244)
In PDB
Homo sapiens (Human)
86CFNon-structural protein 1polymer18019801.31UniProt (P0DTD1)
Pfam (PF11501)
In PDB
Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)pp1ab,ORF1ab polyprotein,Non-structural protein 1
87CIATP-binding cassette sub-family E member 1polymer59967405.21UniProt (P61221)
Pfam (PF00005)
Pfam (PF04068)
Pfam (PF00037)
In PDB
Homo sapiens (Human)2'-5'-oligoadenylate-binding protein,HuHP68,RNase L inhibitor,Ribonuclease 4 inhibitor,RNS4I
88CHEukaryotic peptide chain release factor subunit 1polymer43749092.71UniProt (P62495)
Pfam (PF03463)
Pfam (PF03464)
Pfam (PF03465)
In PDB
Homo sapiens (Human)eRF1,Protein Cl1,TB3-1
89L5, Le, S2, Lg, L7...MAGNESIUM IONnon-polymer24.3256Chemie (MG)
90Lg, Lj, Lm, Lo, Lp...ZINC IONnon-polymer65.48Chemie (ZN)
91CIIRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
92CIADENOSINE-5'-DIPHOSPHATEnon-polymer427.21Chemie (ADP)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains88
Total formula weight4086001.9
Non-Polymers*Number of molecules267
Total formula weight7875.8
All*Total formula weight4093877.7
*Water molecules are not included.

217705

PDB entries from 2024-03-27

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