6Z9T
Transcription termination intermediate complex 5
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (f, a, b, c, d...) | Transcription termination factor Rho | polymer | 419 | 47070.2 | 6 | UniProt (P0AG30) Pfam (PF07498) Pfam (PF07497) Pfam (PF00006) | Escherichia coli | ATP-dependent helicase Rho |
| 2 | G (A) | Transcription termination/antitermination protein NusA | polymer | 497 | 55060.8 | 1 | UniProt (C3SSN7) Pfam (PF08529) Pfam (PF00575) Pfam (PF13184) Pfam (PF14520) UniProt (by SIFTS) (P0AFF6) | Escherichia coli | |
| 3 | H, I (U, V) | DNA-directed RNA polymerase subunit alpha | polymer | 329 | 36558.7 | 2 | UniProt (P0A7Z4) Pfam (PF01193) Pfam (PF01000) Pfam (PF03118) | Escherichia coli | RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha |
| 4 | J (W) | DNA-directed RNA polymerase subunit omega | polymer | 91 | 10249.5 | 1 | UniProt (P0A800) Pfam (PF01192) | Escherichia coli | RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega |
| 5 | K (X) | DNA-directed RNA polymerase subunit beta | polymer | 1342 | 150820.9 | 1 | UniProt (P0A8V4) Pfam (PF04561) Pfam (PF04565) Pfam (PF10385) Pfam (PF00562) Pfam (PF04560) Pfam (PF04563) UniProt (by SIFTS) (P0A8V2) | Escherichia coli | RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta |
| 6 | L (Y) | DNA-directed RNA polymerase subunit beta' | polymer | 1416 | 156537.0 | 1 | UniProt (C3SIA2) Pfam (PF04997) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) UniProt (by SIFTS) (P0A8T7) | Escherichia coli | RNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta' |
| 7 | M (L) | template strand | polymer | 53 | 16133.3 | 1 | synthetic construct | ||
| 8 | N (K) | non template strand | polymer | 50 | 15542.0 | 1 | synthetic construct | ||
| 9 | O (R) | rut RNA | polymer | 99 | 31693.9 | 1 | synthetic construct | ||
| 10 | BA, P, S, V, Y (e, a, b, c, d) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 5 | Chemie (ADP) | |||
| 11 | CA, EA, Q, T, W... (e, Y, a, b, c...) | MAGNESIUM ION | non-polymer | 24.3 | 6 | Chemie (MG) | |||
| 12 | AA, DA, R, U, X (d, e, a, b, c) | BERYLLIUM TRIFLUORIDE ION | non-polymer | 66.0 | 5 | Chemie (BEF) | |||
| 13 | FA, GA (Y) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 14 | HA, IA, JA, KA, LA (a, b, c, d, e) | water | water | 18.0 | 15 | Chemie (HOH) |
Sequence modifications
A: 1 - 495 (UniProt: C3SSN7)
Y: 1 - 1407 (UniProt: C3SIA2)
| PDB | External Database | Details |
|---|---|---|
| Gly -1 | - | expression tag |
| Ala 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Leu 1408 | - | expression tag |
| Glu 1409 | - | expression tag |
| Val 1410 | - | expression tag |
| His 1411 | - | expression tag |
| His 1412 | - | expression tag |
| His 1413 | - | expression tag |
| His 1414 | - | expression tag |
| His 1415 | - | expression tag |
| His 1416 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 15 |
| Total formula weight | 791575.8 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 2742.7 | |
| All* | Total formula weight | 794318.5 |
