6Z9T
Transcription termination intermediate complex 5
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| a | 0003676 | molecular_function | nucleic acid binding |
| a | 0003723 | molecular_function | RNA binding |
| a | 0005515 | molecular_function | protein binding |
| a | 0005524 | molecular_function | ATP binding |
| a | 0005737 | cellular_component | cytoplasm |
| a | 0005829 | cellular_component | cytosol |
| a | 0006353 | biological_process | DNA-templated transcription termination |
| a | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| a | 0016020 | cellular_component | membrane |
| a | 0016887 | molecular_function | ATP hydrolysis activity |
| a | 0039630 | molecular_function | RNA translocase activity |
| a | 0042802 | molecular_function | identical protein binding |
| a | 0062176 | biological_process | R-loop processing |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0001000 | molecular_function | bacterial-type RNA polymerase core enzyme binding |
| A | 0003676 | molecular_function | nucleic acid binding |
| A | 0003700 | molecular_function | DNA-binding transcription factor activity |
| A | 0003723 | molecular_function | RNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006353 | biological_process | DNA-templated transcription termination |
| A | 0008023 | cellular_component | transcription elongation factor complex |
| A | 0019904 | molecular_function | protein domain specific binding |
| A | 0031554 | biological_process | regulation of termination of DNA-templated transcription |
| A | 0031564 | biological_process | transcription antitermination |
| A | 0032784 | biological_process | regulation of DNA-templated transcription elongation |
| A | 0051259 | biological_process | protein complex oligomerization |
| b | 0003676 | molecular_function | nucleic acid binding |
| b | 0003723 | molecular_function | RNA binding |
| b | 0005515 | molecular_function | protein binding |
| b | 0005524 | molecular_function | ATP binding |
| b | 0005737 | cellular_component | cytoplasm |
| b | 0005829 | cellular_component | cytosol |
| b | 0006353 | biological_process | DNA-templated transcription termination |
| b | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| b | 0016020 | cellular_component | membrane |
| b | 0016887 | molecular_function | ATP hydrolysis activity |
| b | 0039630 | molecular_function | RNA translocase activity |
| b | 0042802 | molecular_function | identical protein binding |
| b | 0062176 | biological_process | R-loop processing |
| c | 0003676 | molecular_function | nucleic acid binding |
| c | 0003723 | molecular_function | RNA binding |
| c | 0005515 | molecular_function | protein binding |
| c | 0005524 | molecular_function | ATP binding |
| c | 0005737 | cellular_component | cytoplasm |
| c | 0005829 | cellular_component | cytosol |
| c | 0006353 | biological_process | DNA-templated transcription termination |
| c | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| c | 0016020 | cellular_component | membrane |
| c | 0016887 | molecular_function | ATP hydrolysis activity |
| c | 0039630 | molecular_function | RNA translocase activity |
| c | 0042802 | molecular_function | identical protein binding |
| c | 0062176 | biological_process | R-loop processing |
| d | 0003676 | molecular_function | nucleic acid binding |
| d | 0003723 | molecular_function | RNA binding |
| d | 0005515 | molecular_function | protein binding |
| d | 0005524 | molecular_function | ATP binding |
| d | 0005737 | cellular_component | cytoplasm |
| d | 0005829 | cellular_component | cytosol |
| d | 0006353 | biological_process | DNA-templated transcription termination |
| d | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| d | 0016020 | cellular_component | membrane |
| d | 0016887 | molecular_function | ATP hydrolysis activity |
| d | 0039630 | molecular_function | RNA translocase activity |
| d | 0042802 | molecular_function | identical protein binding |
| d | 0062176 | biological_process | R-loop processing |
| e | 0003676 | molecular_function | nucleic acid binding |
| e | 0003723 | molecular_function | RNA binding |
| e | 0005515 | molecular_function | protein binding |
| e | 0005524 | molecular_function | ATP binding |
| e | 0005737 | cellular_component | cytoplasm |
| e | 0005829 | cellular_component | cytosol |
| e | 0006353 | biological_process | DNA-templated transcription termination |
| e | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| e | 0016020 | cellular_component | membrane |
| e | 0016887 | molecular_function | ATP hydrolysis activity |
| e | 0039630 | molecular_function | RNA translocase activity |
| e | 0042802 | molecular_function | identical protein binding |
| e | 0062176 | biological_process | R-loop processing |
| f | 0003676 | molecular_function | nucleic acid binding |
| f | 0003723 | molecular_function | RNA binding |
| f | 0005515 | molecular_function | protein binding |
| f | 0005524 | molecular_function | ATP binding |
| f | 0005737 | cellular_component | cytoplasm |
| f | 0005829 | cellular_component | cytosol |
| f | 0006353 | biological_process | DNA-templated transcription termination |
| f | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| f | 0016020 | cellular_component | membrane |
| f | 0016887 | molecular_function | ATP hydrolysis activity |
| f | 0039630 | molecular_function | RNA translocase activity |
| f | 0042802 | molecular_function | identical protein binding |
| f | 0062176 | biological_process | R-loop processing |
| U | 0000345 | cellular_component | cytosolic DNA-directed RNA polymerase complex |
| U | 0003677 | molecular_function | DNA binding |
| U | 0003899 | molecular_function | DNA-directed RNA polymerase activity |
| U | 0005515 | molecular_function | protein binding |
| U | 0005737 | cellular_component | cytoplasm |
| U | 0005829 | cellular_component | cytosol |
| U | 0006351 | biological_process | DNA-templated transcription |
| U | 0006352 | biological_process | DNA-templated transcription initiation |
| U | 0006879 | biological_process | intracellular iron ion homeostasis |
| U | 0008023 | cellular_component | transcription elongation factor complex |
| U | 0009408 | biological_process | response to heat |
| U | 0016020 | cellular_component | membrane |
| U | 0031564 | biological_process | transcription antitermination |
| U | 0032784 | biological_process | regulation of DNA-templated transcription elongation |
| U | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| U | 0036460 | biological_process | cellular response to cell envelope stress |
| U | 0042128 | biological_process | nitrate assimilation |
| U | 0044780 | biological_process | bacterial-type flagellum assembly |
| U | 0046983 | molecular_function | protein dimerization activity |
| U | 0048870 | biological_process | cell motility |
| U | 0071973 | biological_process | bacterial-type flagellum-dependent cell motility |
| U | 0090605 | biological_process | submerged biofilm formation |
| U | 2000142 | biological_process | regulation of DNA-templated transcription initiation |
| V | 0000345 | cellular_component | cytosolic DNA-directed RNA polymerase complex |
| V | 0003677 | molecular_function | DNA binding |
| V | 0003899 | molecular_function | DNA-directed RNA polymerase activity |
| V | 0005515 | molecular_function | protein binding |
| V | 0005737 | cellular_component | cytoplasm |
| V | 0005829 | cellular_component | cytosol |
| V | 0006351 | biological_process | DNA-templated transcription |
| V | 0006352 | biological_process | DNA-templated transcription initiation |
| V | 0006879 | biological_process | intracellular iron ion homeostasis |
| V | 0008023 | cellular_component | transcription elongation factor complex |
| V | 0009408 | biological_process | response to heat |
| V | 0016020 | cellular_component | membrane |
| V | 0031564 | biological_process | transcription antitermination |
| V | 0032784 | biological_process | regulation of DNA-templated transcription elongation |
| V | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| V | 0036460 | biological_process | cellular response to cell envelope stress |
| V | 0042128 | biological_process | nitrate assimilation |
| V | 0044780 | biological_process | bacterial-type flagellum assembly |
| V | 0046983 | molecular_function | protein dimerization activity |
| V | 0048870 | biological_process | cell motility |
| V | 0071973 | biological_process | bacterial-type flagellum-dependent cell motility |
| V | 0090605 | biological_process | submerged biofilm formation |
| V | 2000142 | biological_process | regulation of DNA-templated transcription initiation |
| W | 0000345 | cellular_component | cytosolic DNA-directed RNA polymerase complex |
| W | 0001000 | molecular_function | bacterial-type RNA polymerase core enzyme binding |
| W | 0003677 | molecular_function | DNA binding |
| W | 0003899 | molecular_function | DNA-directed RNA polymerase activity |
| W | 0005829 | cellular_component | cytosol |
| W | 0006351 | biological_process | DNA-templated transcription |
| W | 0006352 | biological_process | DNA-templated transcription initiation |
| W | 0006879 | biological_process | intracellular iron ion homeostasis |
| W | 0008023 | cellular_component | transcription elongation factor complex |
| W | 0009408 | biological_process | response to heat |
| W | 0030880 | cellular_component | RNA polymerase complex |
| W | 0031564 | biological_process | transcription antitermination |
| W | 0032784 | biological_process | regulation of DNA-templated transcription elongation |
| W | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| W | 0036460 | biological_process | cellular response to cell envelope stress |
| W | 0042128 | biological_process | nitrate assimilation |
| W | 0044780 | biological_process | bacterial-type flagellum assembly |
| W | 0048870 | biological_process | cell motility |
| W | 0065003 | biological_process | protein-containing complex assembly |
| W | 0071973 | biological_process | bacterial-type flagellum-dependent cell motility |
| W | 0090605 | biological_process | submerged biofilm formation |
| W | 2000142 | biological_process | regulation of DNA-templated transcription initiation |
| X | 0000345 | cellular_component | cytosolic DNA-directed RNA polymerase complex |
| X | 0003677 | molecular_function | DNA binding |
| X | 0003899 | molecular_function | DNA-directed RNA polymerase activity |
| X | 0005515 | molecular_function | protein binding |
| X | 0005737 | cellular_component | cytoplasm |
| X | 0005829 | cellular_component | cytosol |
| X | 0006351 | biological_process | DNA-templated transcription |
| X | 0006352 | biological_process | DNA-templated transcription initiation |
| X | 0006354 | biological_process | DNA-templated transcription elongation |
| X | 0006879 | biological_process | intracellular iron ion homeostasis |
| X | 0008023 | cellular_component | transcription elongation factor complex |
| X | 0009408 | biological_process | response to heat |
| X | 0016020 | cellular_component | membrane |
| X | 0031564 | biological_process | transcription antitermination |
| X | 0032549 | molecular_function | ribonucleoside binding |
| X | 0032784 | biological_process | regulation of DNA-templated transcription elongation |
| X | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| X | 0036460 | biological_process | cellular response to cell envelope stress |
| X | 0042128 | biological_process | nitrate assimilation |
| X | 0044780 | biological_process | bacterial-type flagellum assembly |
| X | 0048870 | biological_process | cell motility |
| X | 0071973 | biological_process | bacterial-type flagellum-dependent cell motility |
| X | 0090605 | biological_process | submerged biofilm formation |
| X | 2000142 | biological_process | regulation of DNA-templated transcription initiation |
| Y | 0000287 | molecular_function | magnesium ion binding |
| Y | 0000345 | cellular_component | cytosolic DNA-directed RNA polymerase complex |
| Y | 0000428 | cellular_component | DNA-directed RNA polymerase complex |
| Y | 0003677 | molecular_function | DNA binding |
| Y | 0003899 | molecular_function | DNA-directed RNA polymerase activity |
| Y | 0005515 | molecular_function | protein binding |
| Y | 0005737 | cellular_component | cytoplasm |
| Y | 0005829 | cellular_component | cytosol |
| Y | 0006351 | biological_process | DNA-templated transcription |
| Y | 0006352 | biological_process | DNA-templated transcription initiation |
| Y | 0006879 | biological_process | intracellular iron ion homeostasis |
| Y | 0008023 | cellular_component | transcription elongation factor complex |
| Y | 0008270 | molecular_function | zinc ion binding |
| Y | 0009408 | biological_process | response to heat |
| Y | 0016020 | cellular_component | membrane |
| Y | 0031564 | biological_process | transcription antitermination |
| Y | 0032784 | biological_process | regulation of DNA-templated transcription elongation |
| Y | 0034062 | molecular_function | 5'-3' RNA polymerase activity |
| Y | 0036460 | biological_process | cellular response to cell envelope stress |
| Y | 0042128 | biological_process | nitrate assimilation |
| Y | 0044780 | biological_process | bacterial-type flagellum assembly |
| Y | 0048870 | biological_process | cell motility |
| Y | 0071973 | biological_process | bacterial-type flagellum-dependent cell motility |
| Y | 0090605 | biological_process | submerged biofilm formation |
| Y | 2000142 | biological_process | regulation of DNA-templated transcription initiation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 12 |
| Details | binding site for residue ADP a 1000 |
| Chain | Residue |
| a | ALA182 |
| f | ARG366 |
| f | LYS367 |
| f | GLU369 |
| a | GLY183 |
| a | LYS184 |
| a | THR185 |
| a | MET186 |
| a | PHE355 |
| a | MG1001 |
| a | BEF1002 |
| a | HOH1102 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue MG a 1001 |
| Chain | Residue |
| a | THR185 |
| a | ADP1000 |
| a | BEF1002 |
| a | HOH1101 |
| a | HOH1102 |
| a | HOH1103 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | binding site for residue BEF a 1002 |
| Chain | Residue |
| a | LYS181 |
| a | LYS184 |
| a | ADP1000 |
| a | MG1001 |
| a | HOH1101 |
| a | HOH1102 |
| a | HOH1103 |
| f | ARG366 |
| site_id | AC4 |
| Number of Residues | 13 |
| Details | binding site for residue ADP b 1000 |
| Chain | Residue |
| a | ARG366 |
| a | GLU369 |
| b | THR158 |
| b | LYS181 |
| b | ALA182 |
| b | GLY183 |
| b | LYS184 |
| b | THR185 |
| b | MET186 |
| b | PHE355 |
| b | MG1001 |
| b | BEF1002 |
| b | HOH1101 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue MG b 1001 |
| Chain | Residue |
| b | THR185 |
| b | ADP1000 |
| b | BEF1002 |
| b | HOH1101 |
| b | HOH1102 |
| b | HOH1103 |
| site_id | AC6 |
| Number of Residues | 8 |
| Details | binding site for residue BEF b 1002 |
| Chain | Residue |
| a | ARG366 |
| b | PRO180 |
| b | LYS181 |
| b | ADP1000 |
| b | MG1001 |
| b | HOH1101 |
| b | HOH1102 |
| b | HOH1103 |
| site_id | AC7 |
| Number of Residues | 12 |
| Details | binding site for residue ADP c 1000 |
| Chain | Residue |
| b | ARG366 |
| b | LYS367 |
| b | GLU369 |
| c | LYS181 |
| c | ALA182 |
| c | GLY183 |
| c | LYS184 |
| c | THR185 |
| c | MET186 |
| c | MG1001 |
| c | BEF1002 |
| c | HOH1103 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | binding site for residue MG c 1001 |
| Chain | Residue |
| c | LYS184 |
| c | THR185 |
| c | ADP1000 |
| c | BEF1002 |
| c | HOH1101 |
| c | HOH1102 |
| c | HOH1103 |
| site_id | AC9 |
| Number of Residues | 8 |
| Details | binding site for residue BEF c 1002 |
| Chain | Residue |
| b | ARG366 |
| c | PRO180 |
| c | LYS181 |
| c | ADP1000 |
| c | MG1001 |
| c | HOH1101 |
| c | HOH1102 |
| c | HOH1103 |
| site_id | AD1 |
| Number of Residues | 12 |
| Details | binding site for residue ADP d 1000 |
| Chain | Residue |
| c | ARG366 |
| c | GLU369 |
| d | LYS181 |
| d | ALA182 |
| d | GLY183 |
| d | LYS184 |
| d | THR185 |
| d | MET186 |
| d | PHE355 |
| d | MG1001 |
| d | BEF1002 |
| d | HOH1101 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue MG d 1001 |
| Chain | Residue |
| d | THR185 |
| d | ADP1000 |
| d | BEF1002 |
| d | HOH1101 |
| d | HOH1102 |
| d | HOH1103 |
| site_id | AD3 |
| Number of Residues | 9 |
| Details | binding site for residue BEF d 1002 |
| Chain | Residue |
| d | PRO180 |
| d | LYS181 |
| d | LYS184 |
| d | ADP1000 |
| d | MG1001 |
| d | HOH1101 |
| d | HOH1102 |
| d | HOH1103 |
| c | ARG366 |
| site_id | AD4 |
| Number of Residues | 12 |
| Details | binding site for residue ADP e 1000 |
| Chain | Residue |
| d | ARG366 |
| d | GLU369 |
| e | LYS181 |
| e | ALA182 |
| e | GLY183 |
| e | LYS184 |
| e | THR185 |
| e | MET186 |
| e | PHE355 |
| e | MG1001 |
| e | BEF1002 |
| e | HOH1102 |
| site_id | AD5 |
| Number of Residues | 6 |
| Details | binding site for residue MG e 1001 |
| Chain | Residue |
| e | THR185 |
| e | ADP1000 |
| e | BEF1002 |
| e | HOH1101 |
| e | HOH1102 |
| e | HOH1103 |
| site_id | AD6 |
| Number of Residues | 10 |
| Details | binding site for residue BEF e 1002 |
| Chain | Residue |
| d | ARG366 |
| e | PRO180 |
| e | LYS181 |
| e | ALA182 |
| e | LYS184 |
| e | ADP1000 |
| e | MG1001 |
| e | HOH1101 |
| e | HOH1102 |
| e | HOH1103 |
| site_id | AD7 |
| Number of Residues | 3 |
| Details | binding site for residue MG Y 1501 |
| Chain | Residue |
| Y | ASP460 |
| Y | ASP462 |
| Y | ASP464 |
| site_id | AD8 |
| Number of Residues | 4 |
| Details | binding site for residue ZN Y 1502 |
| Chain | Residue |
| Y | CYS70 |
| Y | CYS72 |
| Y | CYS85 |
| Y | CYS88 |
| site_id | AD9 |
| Number of Residues | 4 |
| Details | binding site for residue ZN Y 1503 |
| Chain | Residue |
| Y | CYS814 |
| Y | CYS888 |
| Y | CYS895 |
| Y | CYS898 |
| site_id | AE1 |
| Number of Residues | 4 |
| Details | binding site for residue DT L 36 |
| Chain | Residue |
| L | DT38 |
| Y | THR48 |
| Y | LYS50 |
| L | DA37 |
| site_id | AE2 |
| Number of Residues | 4 |
| Details | binding site for residue DA L 37 |
| Chain | Residue |
| Y | LYS50 |
| Y | GLU86 |
| Y | LYS87 |
| L | DT36 |
| site_id | AE3 |
| Number of Residues | 6 |
| Details | binding site for residue DT L 38 |
| Chain | Residue |
| L | DG22 |
| Y | ASN45 |
| L | DT36 |
| a | GLY107 |
| a | GLU108 |
| a | ARG109 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 450 |
| Details | Domain: {"description":"Rho RNA-BD","evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 714 |
| Details | Region: {"description":"N-terminal RNA PBS site","evidences":[{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 174 |
| Details | Region: {"description":"Linker","evidences":[{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 66 |
| Details | Motif: {"description":"Q-loop","evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"17081977","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"19879839","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"34023400","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"7500353","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 24 |
| Details | Motif: {"description":"R-loop","evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"19879839","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"34023400","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"7500353","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1PV4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ICE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E3H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E70","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PDB","id":"3ICE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E3H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E70","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PDB","id":"1XPO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XPR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XPU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ICE","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1PV4","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1PV4","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1PV4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ICE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E3H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E70","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PDB","id":"3ICE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E3H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E70","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI13 |
| Number of Residues | 65 |
| Details | Domain: {"description":"S1 motif","evidences":[{"source":"HAMAP-Rule","id":"MF_00945","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI14 |
| Number of Residues | 63 |
| Details | Domain: {"description":"KH 1","evidences":[{"source":"HAMAP-Rule","id":"MF_00945","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI15 |
| Number of Residues | 66 |
| Details | Domain: {"description":"KH 2","evidences":[{"source":"HAMAP-Rule","id":"MF_00945","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI16 |
| Number of Residues | 50 |
| Details | Repeat: {"description":"1"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI17 |
| Number of Residues | 50 |
| Details | Repeat: {"description":"2"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI18 |
| Number of Residues | 136 |
| Details | Region: {"description":"N-terminal domain (NTD) interacts with RNAP","evidences":[{"source":"PubMed","id":"21922055","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI19 |
| Number of Residues | 81 |
| Details | Region: {"description":"Acidic repeat 1 (AR1)","evidences":[{"source":"PubMed","id":"21922055","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI20 |
| Number of Residues | 125 |
| Details | Region: {"description":"2 X 51 AA approximate repeats"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI21 |
| Number of Residues | 68 |
| Details | Region: {"description":"Acidic repeat 2 (AR2), required for interaction with SuhB, interacts with RNAP subunit alpha (rpoA), NusG","evidences":[{"source":"PubMed","id":"31020314","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31127279","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21922055","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI22 |
| Number of Residues | 6 |
| Details | Region: {"description":"Required for interaction with Crp at class II promoters"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI23 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"ADP-ribosylarginine","evidences":[{"source":"PubMed","id":"4371081","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI24 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"21696463","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI25 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6-acetyllysine; by PatZ","evidences":[{"source":"PubMed","id":"21696463","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI26 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"HAMAP-Rule","id":"MF_01321","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI28 |
| Number of Residues | 11 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"32871103","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4MEX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4MEY","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI29 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"HAMAP-Rule","id":"MF_01322","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"18723842","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |






