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6Z7R

Structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris hildenborough pressurized with Krypton gas - structure wtKr1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(A, C)
Periplasmic [NiFeSe] hydrogenase, small subunitpolymer28330261.62UniProt (Q72AS4)
Pfam (PF01058)
Pfam (PF14720)
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
2B, D
(B, D)
Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containingpolymer48453383.12UniProt (Q72AS3)
Pfam (PF00374)
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303)
3E, F, G, GA, HA...
(A, C)
IRON/SULFUR CLUSTERnon-polymer351.66Chemie (SF4)
4H, JA
(A, C)
oxygen-damaged SF4non-polymer383.62Chemie (6ML)
5AA, BA, CA, CB, DA...
(B, D, A, C)
KRYPTONnon-polymer83.839Chemie (KR)
6T, XA
(B, D)
CARBONMONOXIDE-(DICYANO) IRONnon-polymer135.92Chemie (FCO)
7U, YA
(B, D)
NICKEL (II) IONnon-polymer58.72Chemie (NI)
8V, ZA
(B, D)
FE (II) IONnon-polymer55.82Chemie (FE2)
9AB, W
(D, B)
HYDROSULFURIC ACIDnon-polymer34.12Chemie (H2S)
10BB, X
(D, B)
CHLORIDE IONnon-polymer35.52Chemie (CL)
11JB, KB, LB, MB
(A, B, C, D)
waterwater18.0246Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight167289.3
Non-Polymers*Number of molecules57
Total formula weight6785.2
All*Total formula weight174074.4
*Water molecules are not included.

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PDB entries from 2025-12-10

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