6YWX
The structure of the mitoribosome from Neurospora crassa with tRNA bound to the E-site
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 23S rRNA | polymer | 3464 | 1114857.4 | 1 | Neurospora crassa OR74A | ||
| 2 | B (B) | 60S ribosomal protein L2 | polymer | 383 | 42260.8 | 1 | UniProt (Q7SCX7) Pfam (PF00181) Pfam (PF03947) | Neurospora crassa OR74A | |
| 3 | C (C) | 60S ribosomal protein L3 | polymer | 384 | 41262.5 | 1 | UniProt (Q1K8T6) Pfam (PF00297) | Neurospora crassa OR74A | |
| 4 | D (D) | 60S ribosomal protein L4, variant | polymer | 325 | 36402.8 | 1 | UniProt (V5IMN1) Pfam (PF00573) | Neurospora crassa OR74A | |
| 5 | E (E) | 50S ribosomal protein L5 | polymer | 352 | 39170.9 | 1 | UniProt (Q1K6P0) Pfam (PF00673) | Neurospora crassa OR74A | |
| 6 | F (F) | 60S ribosomal protein L6 | polymer | 255 | 28629.2 | 1 | UniProt (Q7RZF0) Pfam (PF00347) | Neurospora crassa OR74A | |
| 7 | G (G) | RIBOSOMAL_L9 domain-containing protein | polymer | 300 | 33173.2 | 1 | UniProt (Q7S054) Pfam (PF01281) | Neurospora crassa OR74A | |
| 8 | H (f) | uL10m | polymer | 347 | 37363.8 | 1 | UniProt (Q7RZ62) | Neurospora crassa OR74A | |
| 9 | I (g) | 60S ribosomal protein L19 | polymer | 158 | 16629.4 | 1 | UniProt (Q7RX40) Pfam (PF03946) Pfam (PF00298) | Neurospora crassa OR74A | |
| 10 | J (H) | Ribosomal protein L13 | polymer | 183 | 20334.6 | 1 | UniProt (Q7SBV6) Pfam (PF00572) | Neurospora crassa OR74A | |
| 11 | K (I) | 50S ribosomal protein L14 | polymer | 131 | 14135.6 | 1 | UniProt (Q7SBJ8) Pfam (PF00238) | Neurospora crassa OR74A | |
| 12 | L (J) | 50S ribosomal subunit protein L15 | polymer | 312 | 33951.1 | 1 | UniProt (Q7SB98) Pfam (PF00828) | Neurospora crassa OR74A | |
| 13 | M (K) | 60S ribosomal protein L16 | polymer | 249 | 27443.8 | 1 | UniProt (F5HIJ5) Pfam (PF00252) | Neurospora crassa OR74A | |
| 14 | N (L) | 50S ribosomal protein L17 | polymer | 193 | 22181.5 | 1 | UniProt (Q1K8C8) Pfam (PF01196) | Neurospora crassa OR74A | |
| 15 | O (M) | Mitochondrial ribosomal protein | polymer | 258 | 28235.3 | 1 | UniProt (Q7RYW8) Pfam (PF01245) | Neurospora crassa OR74A | |
| 16 | P (N) | Aconitate hydratase | polymer | 217 | 23953.0 | 1 | UniProt (Q7SGE5) Pfam (PF00829) | Neurospora crassa OR74A | |
| 17 | Q (O) | Mitochondrial large ribosomal subunit | polymer | 364 | 41566.0 | 1 | UniProt (Q7S5N0) Pfam (PF00237) | Neurospora crassa OR74A | |
| 18 | R (P) | Mitochondrial ribosomal protein subunit L23 | polymer | 228 | 26005.5 | 1 | UniProt (Q7SA60) Pfam (PF00276) | Neurospora crassa OR74A | |
| 19 | S (Q) | KOW domain-containing protein | polymer | 396 | 45460.1 | 1 | UniProt (Q7RXU7) Pfam (PF22682) | Neurospora crassa OR74A | |
| 20 | T (R) | bL27m | polymer | 447 | 49549.2 | 1 | UniProt (Q1K730) Pfam (PF01016) | Neurospora crassa OR74A | |
| 21 | U (S) | 50S ribosomal protein L24 | polymer | 274 | 31501.1 | 1 | UniProt (Q7SC44) Pfam (PF00830) | Neurospora crassa OR74A | |
| 22 | V (T) | 54S ribosomal protein L4, mitochondrial | polymer | 263 | 29645.3 | 1 | UniProt (Q7S910) Pfam (PF06984) | Neurospora crassa OR74A | |
| 23 | W (U) | 50S ribosomal protein L30 | polymer | 161 | 18196.4 | 1 | UniProt (Q1K8Y7) Pfam (PF00327) | Neurospora crassa OR74A | |
| 24 | X (V) | bL31m | polymer | 219 | 23766.7 | 1 | UniProt (Q1K7L7) Pfam (PF21492) | Neurospora crassa OR74A | |
| 25 | Y (W) | Mitochondrial ribosomal protein subunit L32 | polymer | 129 | 14114.8 | 1 | UniProt (Q1K4P1) Pfam (PF01783) | Neurospora crassa OR74A | |
| 26 | Z (X) | bL33m | polymer | 59 | 7027.6 | 1 | UniProt (V5IM60) Pfam (PF00471) | Neurospora crassa OR74A | |
| 27 | AA (Y) | Related to ribosomal protein L34, mitochondrial | polymer | 140 | 14853.3 | 1 | UniProt (Q1K7P9) Pfam (PF00468) | Neurospora crassa OR74A | |
| 28 | BA (0) | Ribosomal protein | polymer | 124 | 13960.4 | 1 | UniProt (Q7S4E7) Pfam (PF00444) | Neurospora crassa OR74A | |
| 29 | CA (1) | Mitochondrial large ribosomal subunit YmL35 | polymer | 449 | 50749.2 | 1 | UniProt (Q7RXV8) Pfam (PF01161) | Neurospora crassa OR74A | |
| 30 | DA (2) | mL40 | polymer | 370 | 41496.3 | 1 | UniProt (A0A0B0DWX0) | Neurospora crassa OR74A | |
| 31 | EA (3) | mL41 | polymer | 103 | 11796.6 | 1 | UniProt (Q7S5W0) Pfam (PF09809) | Neurospora crassa OR74A | |
| 32 | FA (4) | Mitochondrial ribosomal protein L43 | polymer | 138 | 15126.7 | 1 | UniProt (Q7S300) Pfam (PF05047) | Neurospora crassa OR74A | |
| 33 | GA (5) | 60S ribosomal protein L3 | polymer | 439 | 48106.5 | 1 | UniProt (Q7SA88) Pfam (PF22892) | Neurospora crassa OR74A | |
| 34 | HA (6) | 50S ribosomal subunit L30 | polymer | 368 | 41322.1 | 1 | UniProt (Q7S1Z3) Pfam (PF11788) | Neurospora crassa OR74A | |
| 35 | IA (7) | mL49 | polymer | 165 | 18180.7 | 1 | UniProt (Q7S518) Pfam (PF05046) | Neurospora crassa OR74A | |
| 36 | JA (8) | mL50 | polymer | 443 | 49748.5 | 1 | UniProt (Q7S711) Pfam (PF10501) | Neurospora crassa OR74A | |
| 37 | KA (h) | Mitochondrial ribosomal protein L44 | polymer | 98 | 11128.8 | 1 | UniProt (Q7SGH0) Pfam (PF10780) | Neurospora crassa OR74A | |
| 38 | LA (i) | mL54 | polymer | 218 | 23179.6 | 1 | UniProt (Q7SCZ3) Pfam (PF08561) | Neurospora crassa OR74A | |
| 39 | MA (9) | RNase III domain-containing protein | polymer | 267 | 29625.2 | 1 | UniProt (Q7S1R6) Pfam (PF14622) | Neurospora crassa OR74A | |
| 40 | NA (a) | 60S ribosomal protein L20 | polymer | 225 | 25439.0 | 1 | UniProt (Q1K6U7) Pfam (PF12824) | Neurospora crassa OR74A | |
| 41 | OA (b) | Mitochondrial 60S ribosomal protein L25 | polymer | 162 | 18745.0 | 1 | UniProt (Q7SEK9) Pfam (PF18126) | Neurospora crassa OR74A | |
| 42 | PA (c) | 54S ribosomal protein L31, mitochondrial | polymer | 110 | 13131.5 | 1 | UniProt (U9W8F2) Pfam (PF09784) | Neurospora crassa OR74A | |
| 43 | QA (d) | mL67 | polymer | 292 | 32516.1 | 1 | UniProt (Q7RYM5) Pfam (PF12829) | Neurospora crassa OR74A | |
| 44 | RA (AA) | bS1m | polymer | 470 | 51596.3 | 1 | UniProt (A7UWX2) Pfam (PF11709) | Neurospora crassa OR74A | |
| 45 | SA (BB) | Mito ribosomal protein S2 | polymer | 428 | 47197.3 | 1 | UniProt (V5ILE0) Pfam (PF00318) | Neurospora crassa OR74A | |
| 46 | TA (CC) | Ribosomal protein S5, mitochondrial | polymer | 508 | 58907.3 | 1 | UniProt (P23351) | Neurospora crassa OR74A | |
| 47 | UA (DD) | Mito ribosomal protein S4 | polymer | 453 | 51610.0 | 1 | UniProt (Q7SA90) Pfam (PF01479) | Neurospora crassa OR74A | |
| 48 | VA (EE) | 37S ribosomal protein S5 | polymer | 477 | 53297.5 | 1 | UniProt (Q1K548) Pfam (PF00333) Pfam (PF03719) | Neurospora crassa OR74A | |
| 49 | WA (FF) | Mito ribosomal protein S6 | polymer | 117 | 13304.4 | 1 | UniProt (Q7SB95) Pfam (PF01250) | Neurospora crassa OR74A | |
| 50 | XA (GG) | Ribosomal_S7 domain-containing protein | polymer | 309 | 33821.9 | 1 | UniProt (Q7S6M9) Pfam (PF00177) | Neurospora crassa OR74A | |
| 51 | YA (HH) | 40S ribosomal protein S8 | polymer | 161 | 17743.7 | 1 | UniProt (Q7SHF3) Pfam (PF00410) | Neurospora crassa OR74A | |
| 52 | ZA (II) | 37S ribosomal protein S9, mitochondrial | polymer | 315 | 35319.6 | 1 | UniProt (Q7S7R6) Pfam (PF00380) | Neurospora crassa OR74A | Mitochondrial ribosomal protein 9 |
| 53 | AB (JJ) | 37S ribosomal protein S10, mitochondrial | polymer | 268 | 30377.1 | 1 | UniProt (Q7RYL4) Pfam (PF00338) | Neurospora crassa OR74A | Mitochondrial ribosomal small subunit protein 10 |
| 54 | BB (KK) | Mitochondrial ribosomal protein subunit S18 | polymer | 376 | 42159.8 | 1 | UniProt (Q7SGU0) Pfam (PF00411) | Neurospora crassa OR74A | |
| 55 | CB (LL) | Mitochondrial 30S ribosomal protein S12 | polymer | 174 | 18657.9 | 1 | UniProt (Q7S9I4) Pfam (PF00164) | Neurospora crassa OR74A | |
| 56 | DB (MM) | 40S ribosomal protein S13 | polymer | 119 | 13503.8 | 1 | UniProt (Q7S2C2) Pfam (PF00416) | Neurospora crassa OR74A | |
| 57 | EB (NN) | Mitochondrial 40S ribosomal protein MRP2 | polymer | 113 | 13210.6 | 1 | UniProt (Q7SF85) Pfam (PF00253) | Neurospora crassa OR74A | |
| 58 | FB (OO) | Ribosomal protein S15 | polymer | 320 | 35804.0 | 1 | UniProt (Q1K5G1) Pfam (PF00312) | Neurospora crassa OR74A | |
| 59 | GB (PP) | Ribosomal protein S16, mitochondrial | polymer | 107 | 12140.2 | 1 | UniProt (P08580) Pfam (PF00886) | Neurospora crassa OR74A | S24 |
| 60 | HB (QQ) | Mitochondrial 37S ribosomal protein S17 | polymer | 165 | 18505.7 | 1 | UniProt (Q7S4E0) Pfam (PF00366) | Neurospora crassa OR74A | |
| 61 | IB (RR) | Mito ribosomal protein S18 | polymer | 256 | 28468.6 | 1 | UniProt (Q1K8E0) Pfam (PF01084) | Neurospora crassa OR74A | |
| 62 | JB (SS) | Mitochondrial ribosomal protein S19 | polymer | 91 | 10408.3 | 1 | UniProt (Q1K8V2) Pfam (PF00203) | Neurospora crassa OR74A | |
| 63 | KB (TT) | Mito ribosomal protein S21 | polymer | 236 | 25679.8 | 1 | UniProt (Q7SAJ1) Pfam (PF01165) | Neurospora crassa OR74A | |
| 64 | LB (UU) | 37S ribosomal protein S25, mitochondrial | polymer | 253 | 29553.6 | 1 | UniProt (Q873E4) Pfam (PF13741) | Neurospora crassa OR74A | |
| 65 | MB (VV) | mS26 | polymer | 316 | 35312.2 | 1 | UniProt (Q7SHR9) Pfam (PF26163) | Neurospora crassa OR74A | |
| 66 | NB (WW) | mS27 | polymer | 396 | 44923.7 | 1 | UniProt (Q7RYW7) | Neurospora crassa OR74A | |
| 67 | OB (XX) | Mitochondrial ribosomal protein DAP3 | polymer | 469 | 51451.4 | 1 | UniProt (Q7SD06) Pfam (PF10236) | Neurospora crassa OR74A | |
| 68 | PB (YY) | mS33 | polymer | 108 | 12169.2 | 1 | UniProt (Q1K5R0) Pfam (PF08293) | Neurospora crassa OR74A | |
| 69 | QB (ZZ) | 37S ribosomal protein S24, mitochondrial | polymer | 382 | 44057.1 | 1 | UniProt (Q1K5Z0) Pfam (PF10213) | Neurospora crassa OR74A | |
| 70 | RB (11) | 37S ribosomal protein mrp10, mitochondrial | polymer | 90 | 9907.5 | 1 | UniProt (Q7S4Y4) | Neurospora crassa OR74A | |
| 71 | SB (22) | DUF1713 domain-containing protein | polymer | 344 | 38126.3 | 1 | UniProt (Q7SHR6) Pfam (PF08213) | Neurospora crassa OR74A | |
| 72 | TB (33) | IGR domain-containing protein | polymer | 236 | 26612.9 | 1 | UniProt (Q1K6Q3) Pfam (PF09597) | Neurospora crassa OR74A | |
| 73 | UB, VB (44, 55) | Fe superoxide dismutase | polymer | 310 | 34270.8 | 2 | UniProt (Q7S2H6) Pfam (PF02777) | Neurospora crassa OR74A | |
| 74 | WB (66) | mS45 | polymer | 348 | 39274.6 | 1 | UniProt (Q7SHB2) Pfam (PF12298) | Neurospora crassa OR74A | |
| 75 | XB (77) | mS46 | polymer | 414 | 43112.7 | 1 | UniProt (Q7SG49) | Neurospora crassa OR74A | |
| 76 | YB (88) | 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial | polymer | 508 | 56401.2 | 1 | UniProt (Q1K7A4) Pfam (PF16113) | Neurospora crassa OR74A | 3-hydroxyisobutyryl-coenzyme A hydrolase |
| 77 | AC, ZB (00, 99) | IF1 | polymer | 95 | 10664.1 | 2 | UniProt (V5IRA3) Pfam (PF04568) | Neurospora crassa OR74A | |
| 78 | BC (aa) | 16S rRNA | polymer | 1864 | 600339.4 | 1 | GenBank (452883339) | Neurospora crassa OR74A | |
| 79 | CC (bb) | tRNA E-site | polymer | 61 | 19593.7 | 1 | Neurospora crassa OR74A | ||
| 80 | DC (e) | 60S ribosomal protein L1 | polymer | 303 | 33327.7 | 1 | UniProt (Q1K699) Pfam (PF00687) | Neurospora crassa OR74A | |
| 81 | EC (j) | L51_S25_CI-B8 domain-containing protein | polymer | 201 | 22734.3 | 1 | UniProt (Q7RWZ7) Pfam (PF05047) | Neurospora crassa OR74A | |
| 82 | AD, AE, AF, AG, AH... (A, aa, BB, XX, 00) | MAGNESIUM ION | non-polymer | 24.3 | 249 | Chemie (MG) | |||
| 83 | ZH (A) | SPERMINE | non-polymer | 202.3 | 1 | Chemie (SPM) | |||
| 84 | AI, AJ, BI, BJ, CI... (A, K, 2, aa, 3...) | POTASSIUM ION | non-polymer | 39.1 | 50 | Chemie (K) | |||
| 85 | CJ (E) | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | non-polymer | 663.4 | 1 | Chemie (NAD) | |||
| 86 | EJ, FJ (W, 0) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 87 | JJ (XX) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 83 |
| Total formula weight | 4114404.0 | |
| Non-Polymers* | Number of molecules | 304 |
| Total formula weight | 9510.6 | |
| All* | Total formula weight | 4123914.6 |
