6YWX
The structure of the mitoribosome from Neurospora crassa with tRNA bound to the E-site
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | 23S rRNA | polymer | 3464 | 1114857.4 | 1 | Neurospora crassa OR74A | ||
| 2 | B | 60S ribosomal protein L2 | polymer | 383 | 42260.8 | 1 | UniProt (Q7SCX7) Pfam (PF00181) Pfam (PF03947) In PDB | Neurospora crassa OR74A | |
| 3 | C | 60S ribosomal protein L3 | polymer | 384 | 41262.5 | 1 | UniProt (Q1K8T6) Pfam (PF00297) In PDB | Neurospora crassa OR74A | |
| 4 | D | 60S ribosomal protein L4, variant | polymer | 325 | 36402.8 | 1 | UniProt (V5IMN1) Pfam (PF00573) In PDB | Neurospora crassa OR74A | |
| 5 | E | 50S ribosomal protein L5 | polymer | 352 | 39170.9 | 1 | UniProt (Q1K6P0) Pfam (PF00673) In PDB | Neurospora crassa OR74A | |
| 6 | F | 60S ribosomal protein L6 | polymer | 255 | 28629.2 | 1 | UniProt (Q7RZF0) Pfam (PF00347) In PDB | Neurospora crassa OR74A | |
| 7 | G | RIBOSOMAL_L9 domain-containing protein | polymer | 300 | 33173.2 | 1 | UniProt (Q7S054) Pfam (PF01281) In PDB | Neurospora crassa OR74A | |
| 8 | f | uL10m | polymer | 347 | 37363.8 | 1 | UniProt (Q7RZ62) In PDB | Neurospora crassa OR74A | |
| 9 | g | 60S ribosomal protein L19 | polymer | 158 | 16629.4 | 1 | UniProt (Q7RX40) Pfam (PF03946) Pfam (PF00298) In PDB | Neurospora crassa OR74A | |
| 10 | H | Ribosomal protein L13 | polymer | 183 | 20334.6 | 1 | UniProt (Q7SBV6) Pfam (PF00572) In PDB | Neurospora crassa OR74A | |
| 11 | I | 50S ribosomal protein L14 | polymer | 131 | 14135.6 | 1 | UniProt (Q7SBJ8) Pfam (PF00238) In PDB | Neurospora crassa OR74A | |
| 12 | J | 50S ribosomal subunit protein L15 | polymer | 312 | 33951.1 | 1 | UniProt (Q7SB98) Pfam (PF00828) In PDB | Neurospora crassa OR74A | |
| 13 | K | 60S ribosomal protein L16 | polymer | 249 | 27443.8 | 1 | UniProt (F5HIJ5) Pfam (PF00252) In PDB | Neurospora crassa OR74A | |
| 14 | L | 50S ribosomal protein L17 | polymer | 193 | 22181.5 | 1 | UniProt (Q1K8C8) Pfam (PF01196) In PDB | Neurospora crassa OR74A | |
| 15 | M | Mitochondrial ribosomal protein | polymer | 258 | 28235.3 | 1 | UniProt (Q7RYW8) Pfam (PF01245) In PDB | Neurospora crassa OR74A | |
| 16 | N | Aconitate hydratase | polymer | 217 | 23953.0 | 1 | UniProt (Q7SGE5) Pfam (PF00829) In PDB | Neurospora crassa OR74A | |
| 17 | O | Mitochondrial large ribosomal subunit | polymer | 364 | 41566.0 | 1 | UniProt (Q7S5N0) Pfam (PF00237) In PDB | Neurospora crassa OR74A | |
| 18 | P | Mitochondrial ribosomal protein subunit L23 | polymer | 228 | 26005.5 | 1 | UniProt (Q7SA60) Pfam (PF00276) In PDB | Neurospora crassa OR74A | |
| 19 | Q | KOW domain-containing protein | polymer | 396 | 45460.1 | 1 | UniProt (Q7RXU7) Pfam (PF22682) Pfam (PF00467) In PDB | Neurospora crassa OR74A | |
| 20 | R | bL27m | polymer | 447 | 49549.2 | 1 | UniProt (Q1K730) Pfam (PF01016) In PDB | Neurospora crassa OR74A | |
| 21 | S | 50S ribosomal protein L24 | polymer | 274 | 31501.1 | 1 | UniProt (Q7SC44) Pfam (PF00830) In PDB | Neurospora crassa OR74A | |
| 22 | T | 54S ribosomal protein L4, mitochondrial | polymer | 263 | 29645.3 | 1 | UniProt (Q7S910) Pfam (PF06984) In PDB | Neurospora crassa OR74A | |
| 23 | U | 50S ribosomal protein L30 | polymer | 161 | 18196.4 | 1 | UniProt (Q1K8Y7) Pfam (PF00327) In PDB | Neurospora crassa OR74A | |
| 24 | V | bL31m | polymer | 219 | 23766.7 | 1 | UniProt (Q1K7L7) Pfam (PF21492) In PDB | Neurospora crassa OR74A | |
| 25 | W | Mitochondrial ribosomal protein subunit L32 | polymer | 129 | 14114.8 | 1 | UniProt (Q1K4P1) Pfam (PF01783) In PDB | Neurospora crassa OR74A | |
| 26 | X | bL33m | polymer | 59 | 7027.6 | 1 | UniProt (V5IM60) Pfam (PF00471) In PDB | Neurospora crassa OR74A | |
| 27 | Y | Related to ribosomal protein L34, mitochondrial | polymer | 140 | 14853.3 | 1 | UniProt (Q1K7P9) Pfam (PF00468) In PDB | Neurospora crassa OR74A | |
| 28 | 0 | Ribosomal protein | polymer | 124 | 13960.4 | 1 | UniProt (Q7S4E7) Pfam (PF00444) In PDB | Neurospora crassa OR74A | |
| 29 | 1 | Mitochondrial large ribosomal subunit YmL35 | polymer | 449 | 50749.2 | 1 | UniProt (Q7RXV8) Pfam (PF01161) In PDB | Neurospora crassa OR74A | |
| 30 | 2 | mL40 | polymer | 370 | 41496.3 | 1 | UniProt (A0A0B0DWX0) In PDB | Neurospora crassa OR74A | |
| 31 | 3 | mL41 | polymer | 103 | 11796.6 | 1 | UniProt (Q7S5W0) Pfam (PF09809) In PDB | Neurospora crassa OR74A | |
| 32 | 4 | Mitochondrial ribosomal protein L43 | polymer | 138 | 15126.7 | 1 | UniProt (Q7S300) Pfam (PF05047) In PDB | Neurospora crassa OR74A | |
| 33 | 5 | 60S ribosomal protein L3 | polymer | 439 | 48106.5 | 1 | UniProt (Q7SA88) Pfam (PF00035) In PDB | Neurospora crassa OR74A | |
| 34 | 6 | 50S ribosomal subunit L30 | polymer | 368 | 41322.1 | 1 | UniProt (Q7S1Z3) Pfam (PF11788) Pfam (PF00293) In PDB | Neurospora crassa OR74A | |
| 35 | 7 | mL49 | polymer | 165 | 18180.7 | 1 | UniProt (Q7S518) Pfam (PF05046) In PDB | Neurospora crassa OR74A | |
| 36 | 8 | mL50 | polymer | 443 | 49748.5 | 1 | UniProt (Q7S711) Pfam (PF10501) In PDB | Neurospora crassa OR74A | |
| 37 | h | Mitochondrial ribosomal protein L44 | polymer | 98 | 11128.8 | 1 | UniProt (Q7SGH0) Pfam (PF10780) In PDB | Neurospora crassa OR74A | |
| 38 | i | mL54 | polymer | 218 | 23179.6 | 1 | UniProt (Q7SCZ3) Pfam (PF08561) In PDB | Neurospora crassa OR74A | |
| 39 | 9 | RNase III domain-containing protein | polymer | 267 | 29625.2 | 1 | UniProt (Q7S1R6) Pfam (PF14622) In PDB | Neurospora crassa OR74A | |
| 40 | a | 60S ribosomal protein L20 | polymer | 225 | 25439.0 | 1 | UniProt (Q1K6U7) Pfam (PF12824) In PDB | Neurospora crassa OR74A | |
| 41 | b | Mitochondrial 60S ribosomal protein L25 | polymer | 162 | 18745.0 | 1 | UniProt (Q7SEK9) Pfam (PF18126) In PDB | Neurospora crassa OR74A | |
| 42 | c | 54S ribosomal protein L31, mitochondrial | polymer | 110 | 13131.5 | 1 | UniProt (U9W8F2) Pfam (PF09784) In PDB | Neurospora crassa OR74A | |
| 43 | d | mL67 | polymer | 292 | 32516.1 | 1 | UniProt (Q7RYM5) Pfam (PF12829) In PDB | Neurospora crassa OR74A | |
| 44 | AA | bS1m | polymer | 470 | 51596.3 | 1 | UniProt (A7UWX2) Pfam (PF11709) In PDB | Neurospora crassa OR74A | |
| 45 | BB | Mito ribosomal protein S2 | polymer | 428 | 47197.3 | 1 | UniProt (V5ILE0) Pfam (PF00318) In PDB | Neurospora crassa OR74A | |
| 46 | CC | Ribosomal protein S5, mitochondrial | polymer | 508 | 58907.3 | 1 | UniProt (P23351) In PDB | Neurospora crassa OR74A | |
| 47 | DD | Mito ribosomal protein S4 | polymer | 453 | 51610.0 | 1 | UniProt (Q7SA90) Pfam (PF01479) In PDB | Neurospora crassa OR74A | |
| 48 | EE | 37S ribosomal protein S5 | polymer | 477 | 53297.5 | 1 | UniProt (Q1K548) Pfam (PF00333) Pfam (PF03719) In PDB | Neurospora crassa OR74A | |
| 49 | FF | Mito ribosomal protein S6 | polymer | 117 | 13304.4 | 1 | UniProt (Q7SB95) Pfam (PF01250) In PDB | Neurospora crassa OR74A | |
| 50 | GG | Ribosomal_S7 domain-containing protein | polymer | 309 | 33821.9 | 1 | UniProt (Q7S6M9) Pfam (PF00177) In PDB | Neurospora crassa OR74A | |
| 51 | HH | 40S ribosomal protein S8 | polymer | 161 | 17743.7 | 1 | UniProt (Q7SHF3) Pfam (PF00410) In PDB | Neurospora crassa OR74A | |
| 52 | II | 37S ribosomal protein S9, mitochondrial | polymer | 315 | 35319.6 | 1 | UniProt (Q7S7R6) Pfam (PF00380) In PDB | Neurospora crassa OR74A | Mitochondrial ribosomal protein 9 |
| 53 | JJ | 37S ribosomal protein S10, mitochondrial | polymer | 268 | 30377.1 | 1 | UniProt (Q7RYL4) Pfam (PF00338) In PDB | Neurospora crassa OR74A | Mitochondrial ribosomal small subunit protein 10 |
| 54 | KK | Mitochondrial ribosomal protein subunit S18 | polymer | 376 | 42159.8 | 1 | UniProt (Q7SGU0) Pfam (PF00411) In PDB | Neurospora crassa OR74A | |
| 55 | LL | Mitochondrial 30S ribosomal protein S12 | polymer | 174 | 18657.9 | 1 | UniProt (Q7S9I4) Pfam (PF00164) In PDB | Neurospora crassa OR74A | |
| 56 | MM | 40S ribosomal protein S13 | polymer | 119 | 13503.8 | 1 | UniProt (Q7S2C2) Pfam (PF00416) In PDB | Neurospora crassa OR74A | |
| 57 | NN | Mitochondrial 40S ribosomal protein MRP2 | polymer | 113 | 13210.6 | 1 | UniProt (Q7SF85) Pfam (PF00253) In PDB | Neurospora crassa OR74A | |
| 58 | OO | Ribosomal protein S15 | polymer | 320 | 35804.0 | 1 | UniProt (Q1K5G1) Pfam (PF00312) In PDB | Neurospora crassa OR74A | |
| 59 | PP | Ribosomal protein S16, mitochondrial | polymer | 107 | 12140.2 | 1 | UniProt (P08580) Pfam (PF00886) In PDB | Neurospora crassa OR74A | S24 |
| 60 | Mitochondrial 37S ribosomal protein S17 | polymer | 165 | 18505.7 | 1 | UniProt (Q7S4E0) Pfam (PF00366) In PDB | Neurospora crassa OR74A | ||
| 61 | RR | Mito ribosomal protein S18 | polymer | 256 | 28468.6 | 1 | UniProt (Q1K8E0) Pfam (PF01084) In PDB | Neurospora crassa OR74A | |
| 62 | SS | Mitochondrial ribosomal protein S19 | polymer | 91 | 10408.3 | 1 | UniProt (Q1K8V2) Pfam (PF00203) In PDB | Neurospora crassa OR74A | |
| 63 | TT | Mito ribosomal protein S21 | polymer | 236 | 25679.8 | 1 | UniProt (Q7SAJ1) Pfam (PF01165) In PDB | Neurospora crassa OR74A | |
| 64 | UU | 37S ribosomal protein S25, mitochondrial | polymer | 253 | 29553.6 | 1 | UniProt (Q873E4) Pfam (PF13741) In PDB | Neurospora crassa OR74A | |
| 65 | VV | mS26 | polymer | 316 | 35312.2 | 1 | UniProt (Q7SHR9) In PDB | Neurospora crassa OR74A | |
| 66 | WW | mS27 | polymer | 396 | 44923.7 | 1 | UniProt (Q7RYW7) In PDB | Neurospora crassa OR74A | |
| 67 | XX | Mitochondrial ribosomal protein DAP3 | polymer | 469 | 51451.4 | 1 | UniProt (Q7SD06) Pfam (PF10236) In PDB | Neurospora crassa OR74A | |
| 68 | YY | mS33 | polymer | 108 | 12169.2 | 1 | UniProt (Q1K5R0) Pfam (PF08293) In PDB | Neurospora crassa OR74A | |
| 69 | ZZ | 37S ribosomal protein S24, mitochondrial | polymer | 382 | 44057.1 | 1 | UniProt (Q1K5Z0) Pfam (PF10213) In PDB | Neurospora crassa OR74A | |
| 70 | 11 | 37S ribosomal protein mrp10, mitochondrial | polymer | 90 | 9907.5 | 1 | UniProt (Q7S4Y4) In PDB | Neurospora crassa OR74A | |
| 71 | 22 | DUF1713 domain-containing protein | polymer | 344 | 38126.3 | 1 | UniProt (Q7SHR6) Pfam (PF08213) In PDB | Neurospora crassa OR74A | |
| 72 | 33 | IGR domain-containing protein | polymer | 236 | 26612.9 | 1 | UniProt (Q1K6Q3) Pfam (PF09597) In PDB | Neurospora crassa OR74A | |
| 73 | 44, 55 | Fe superoxide dismutase | polymer | 310 | 34270.8 | 2 | UniProt (Q7S2H6) Pfam (PF02777) In PDB | Neurospora crassa OR74A | |
| 74 | 66 | mS45 | polymer | 348 | 39274.6 | 1 | UniProt (Q7SHB2) Pfam (PF12298) In PDB | Neurospora crassa OR74A | |
| 75 | 77 | mS46 | polymer | 414 | 43112.7 | 1 | UniProt (Q7SG49) In PDB | Neurospora crassa OR74A | |
| 76 | 88 | 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial | polymer | 508 | 56401.2 | 1 | UniProt (Q1K7A4) Pfam (PF16113) In PDB | Neurospora crassa OR74A | 3-hydroxyisobutyryl-coenzyme A hydrolase |
| 77 | 00, 99 | IF1 | polymer | 95 | 10664.1 | 2 | UniProt (V5IRA3) Pfam (PF04568) In PDB | Neurospora crassa OR74A | |
| 78 | aa | 16S rRNA | polymer | 1864 | 600339.4 | 1 | GenBank (452883339) | Neurospora crassa OR74A | |
| 79 | bb | tRNA E-site | polymer | 61 | 19593.7 | 1 | Neurospora crassa OR74A | ||
| 80 | e | 60S ribosomal protein L1 | polymer | 303 | 33327.7 | 1 | UniProt (Q1K699) Pfam (PF00687) In PDB | Neurospora crassa OR74A | |
| 81 | j | L51_S25_CI-B8 domain-containing protein | polymer | 201 | 22734.3 | 1 | UniProt (Q7RWZ7) Pfam (PF05047) In PDB | Neurospora crassa OR74A | |
| 82 | A, aa, BB, XX, 00 | MAGNESIUM ION | non-polymer | 24.3 | 249 | Chemie (MG) | |||
| 83 | A | SPERMINE | non-polymer | 202.3 | 1 | Chemie (SPM) | |||
| 84 | A, K, 2, aa, 3... | POTASSIUM ION | non-polymer | 39.1 | 50 | Chemie (K) | |||
| 85 | E | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | non-polymer | 663.4 | 1 | Chemie (NAD) | |||
| 86 | W, 0 | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 87 | XX | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 83 |
| Total formula weight | 4114404.0 | |
| Non-Polymers* | Number of molecules | 304 |
| Total formula weight | 9510.6 | |
| All* | Total formula weight | 4123914.6 |
