6YWS

The structure of the large subunit of the mitoribosome from Neurospora crassa

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	RNA (2820-MER)	polymer	3464	1114857.4	1		Neurospora crassa OR74A
2	B	60S ribosomal protein L2	polymer	383	42260.8	1	UniProt (Q7SCX7) Pfam (PF00181) Pfam (PF03947) In PDB	Neurospora crassa OR74A
3	C	60S ribosomal protein L3	polymer	384	41262.5	1	UniProt (Q1K8T6) Pfam (PF00297) In PDB	Neurospora crassa OR74A
4	D	60S ribosomal protein L4, variant	polymer	325	36402.8	1	UniProt (V5IMN1) Pfam (PF00573) In PDB	Neurospora crassa OR74A
5	E	50S ribosomal protein L5	polymer	352	39170.9	1	UniProt (Q1K6P0) Pfam (PF00673) In PDB	Neurospora crassa OR74A
6	F	60S ribosomal protein L6	polymer	255	28629.2	1	UniProt (Q7RZF0) Pfam (PF00347) In PDB	Neurospora crassa OR74A
7	G	RIBOSOMAL_L9 domain-containing protein	polymer	300	33173.2	1	UniProt (Q7S054) Pfam (PF01281) In PDB	Neurospora crassa OR74A
8	f	Uncharacterized protein	polymer	347	37363.8	1	UniProt (Q7RZ62) In PDB	Neurospora crassa OR74A
9	g	60S ribosomal protein L19	polymer	158	16629.4	1	UniProt (Q7RX40) Pfam (PF03946) Pfam (PF00298) In PDB	Neurospora crassa OR74A
10	H	Ribosomal protein L13	polymer	183	20334.6	1	UniProt (Q7SBV6) Pfam (PF00572) In PDB	Neurospora crassa OR74A
11	I	50S ribosomal protein L14	polymer	131	14135.6	1	UniProt (Q7SBJ8) Pfam (PF00238) In PDB	Neurospora crassa OR74A
12	J	Ribosomal protein L15	polymer	312	33951.1	1	UniProt (A0A0B0DM93) In PDB	Neurospora crassa OR74A
13	K	60S ribosomal protein L16	polymer	249	27443.8	1	UniProt (F5HIJ5) Pfam (PF00252) In PDB	Neurospora crassa OR74A
14	L	50S ribosomal protein L17	polymer	193	22181.5	1	UniProt (Q1K8C8) Pfam (PF01196) In PDB	Neurospora crassa OR74A
15	M	Mitochondrial ribosomal protein	polymer	258	28235.3	1	UniProt (Q7RYW8) Pfam (PF01245) In PDB	Neurospora crassa OR74A
16	N	Aconitate hydratase	polymer	217	23953.0	1	UniProt (Q7SGE5) Pfam (PF00829) In PDB	Neurospora crassa OR74A
17	O	Mitochondrial large ribosomal subunit	polymer	364	41566.0	1	UniProt (Q7S5N0) Pfam (PF00237) In PDB	Neurospora crassa OR74A
18	P	Mitochondrial ribosomal protein subunit L23	polymer	228	26005.5	1	UniProt (Q7SA60) Pfam (PF00276) In PDB	Neurospora crassa OR74A
19	Q	KOW domain-containing protein	polymer	396	45460.1	1	UniProt (Q7RXU7) Pfam (PF22682) Pfam (PF00467) In PDB	Neurospora crassa OR74A
20	R	Uncharacterized protein	polymer	447	49549.2	1	UniProt (Q1K730) Pfam (PF01016) In PDB	Neurospora crassa OR74A
21	S	50S ribosomal protein L24	polymer	274	31501.1	1	UniProt (Q7SC44) Pfam (PF00830) In PDB	Neurospora crassa OR74A
22	T	54S ribosomal protein L4, mitochondrial	polymer	263	29645.3	1	UniProt (Q7S910) Pfam (PF06984) In PDB	Neurospora crassa OR74A
23	U	50S ribosomal protein L30	polymer	161	18196.4	1	UniProt (Q1K8Y7) Pfam (PF00327) In PDB	Neurospora crassa OR74A
24	V	Uncharacterized protein	polymer	219	23766.7	1	UniProt (Q1K7L7) Pfam (PF21492) In PDB	Neurospora crassa OR74A
25	W	Mitochondrial ribosomal protein subunit L32	polymer	129	14114.8	1	UniProt (Q1K4P1) Pfam (PF01783) In PDB	Neurospora crassa OR74A
26	X	Uncharacterized protein	polymer	59	7027.6	1	UniProt (V5IM60) Pfam (PF00471) In PDB	Neurospora crassa OR74A
27	Y	Related to ribosomal protein L34, mitochondrial	polymer	140	14853.3	1	UniProt (Q96U95) Pfam (PF00468) In PDB	Neurospora crassa OR74A
28	0	Ribosomal protein	polymer	124	13960.4	1	UniProt (Q7S4E7) Pfam (PF00444) In PDB	Neurospora crassa OR74A
29	1	Mitochondrial large ribosomal subunit YmL35	polymer	449	50749.2	1	UniProt (Q7RXV8) Pfam (PF01161) In PDB	Neurospora crassa OR74A
30	2	Uncharacterized protein	polymer	370	41496.3	1	UniProt (A0A0B0DWX0) In PDB	Neurospora crassa OR74A
31	3	Uncharacterized protein	polymer	103	11796.6	1	UniProt (Q7S5W0) Pfam (PF09809) In PDB	Neurospora crassa OR74A
32	4	Mitochondrial ribosomal protein L43	polymer	138	15126.7	1	UniProt (Q7S300) Pfam (PF05047) In PDB	Neurospora crassa OR74A
33	5	60S ribosomal protein L3	polymer	439	48106.5	1	UniProt (Q7SA88) Pfam (PF00035) In PDB	Neurospora crassa OR74A
34	6	50S ribosomal subunit L30	polymer	368	41322.1	1	UniProt (Q7S1Z3) Pfam (PF11788) Pfam (PF00293) In PDB	Neurospora crassa OR74A
35	7	Uncharacterized protein	polymer	165	18180.7	1	UniProt (Q7S518) Pfam (PF05046) In PDB	Neurospora crassa OR74A
36	8	Uncharacterized protein	polymer	443	49748.5	1	UniProt (Q7S711) Pfam (PF10501) In PDB	Neurospora crassa OR74A
37	h	Mitochondrial ribosomal protein L44	polymer	98	11128.8	1	UniProt (Q7SGH0) Pfam (PF10780) In PDB	Neurospora crassa OR74A
38	i	Uncharacterized protein	polymer	218	23179.6	1	UniProt (Q7SCZ3) Pfam (PF08561) In PDB	Neurospora crassa OR74A
39	9	RNase III domain-containing protein	polymer	267	29625.2	1	UniProt (Q7S1R6) Pfam (PF14622) In PDB	Neurospora crassa OR74A
40	a	60S ribosomal protein L20	polymer	225	25439.0	1	UniProt (Q1K6U7) Pfam (PF12824) In PDB	Neurospora crassa OR74A
41	b	Mitoc_mL59 domain-containing protein	polymer	162	18745.0	1	UniProt (A0A0B0DMU6) In PDB	Neurospora crassa OR74A
42	c	54S ribosomal protein L31, mitochondrial	polymer	110	13131.5	1	UniProt (U9W8F2) Pfam (PF09784) In PDB	Neurospora crassa OR74A
43	d	Uncharacterized protein	polymer	292	32516.1	1	UniProt (Q7RYM5) Pfam (PF12829) In PDB	Neurospora crassa OR74A
44	e	60S ribosomal protein L1	polymer	303	33327.7	1	UniProt (Q1K699) Pfam (PF00687) In PDB	Neurospora crassa OR74A
45	j	L51_S25_CI-B8 domain-containing protein	polymer	201	22734.3	1	UniProt (Q7RWZ7) Pfam (PF05047) In PDB	Neurospora crassa OR74A
46	A, K, 2, 3	MAGNESIUM ION	non-polymer		24.3	163	Chemie (MG)
47	A	SPERMINE	non-polymer		202.3	1	Chemie (SPM)
48	A	POTASSIUM ION	non-polymer		39.1	12	Chemie (K)
49	W, 0	ZINC ION	non-polymer		65.4	2	Chemie (ZN)
50	2	NICOTINAMIDE-ADENINE-DINUCLEOTIDE	non-polymer		663.4	1	Chemie (NAD)

Contents of the asymmetric unit

Polymers	Number of chains	45
	Total formula weight	2361984.9
Non-Polymers*	Number of molecules	179
	Total formula weight	5427.5
All*	Total formula weight	2367412.4

*Water molecules are not included.